Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1848 ATGGAGGCTCTCGAATCGAACCCTAGTCCCCCTCCCTTAGAAACCATCACATCCTCCTATGCTCCACCTCCAGACAACTTCTCATCAGAGTATCAGAACTCATCGCAGCAATTCGAACAACCAGTAACTTCTTCAGACTATCAAATTTCATCGAAATCCCGTGCATCGGATGCTCAAAACACTGGCAGTACTTTCCCGAACGCCTTCATCAACGGGCACACAGCGGATGACGGTGATGGCGGTGCCAATAACAGTTCGAAGCCTGAGGTTGCCAAGCCGTTGGTTTCGGAGAACGGCATGACTAATAATACCCAAAGTGGCACTGATAGGGATCATTCTGGCGGTGAGGAAGAGACTACAAGCAGACGCCGCCGACGAAGTCGATGGGATCCCCAGCCCGAGTCGAACGACCAGAGCGGAGGAGAAACGGGAAGCGGAACGAGGAAGAGGAAGTCCCGTTGGGCCGATGACGAGCCGAAGCCGGTGATTCAGCTTCCTGATTTCATGGGCGGTATTGAGTTCGATCCTGAAATTCAAGCTTTGAATAGTAGGCTTCTTGAAATTAGTCGAATGCTACAATCAGGTCTGCCTTTAGATGATCGACCGGAAGGTGCTCGATCGCCTTCGCCAGAACCTATATATGATAATATGGGGATTCGAATTAACACTAGAGAATATCGTGCGCGTGAAAGATTGCAAAAAGAGAGGCAAGAAATTATATCTCAGATTATAAAGAAAAACCCCGCATTTAAGCCACCAGCAGATTACAGGCCACCAAAGCTTCAGAAGAAGCTATACATACCAATGAAAGAGTATCCCGGTTACAATTTTATAGGGCTAATTATTGGTCCGAGAGGCAACACCCAGAAGCGGATGGAGAGAGAGACTGGTGCTAAAATTGTGATTCGAGGTAAAGGGTCAGTGAAAGAGGGTAGGCTTCAACAGAAGAGGGATTTGAAACCTGACCCTTCAGAAAATGAAGATTTGCATGTCTTAGTGGAGGCAGATACACCGGAATCACTAGAAGCTGCTGCAGGTATGGTGGAGAAGCTCTTGCAACCGGTGGATGAGGTGTTGAATGAGCATAAGAGGCAACAGCTGAGGGAACTTGCAGCCTTGAATGGGACAATCAGGGATGAAGAATACTGCCGGTTGTGTGGTGAACCTGGTCATCGCCAATATGCCTGTCCTACCCGCACTTCTACATTTAAGAGTGAAGTTGTCTGTAAGCATTGTGGGGATGGTGGTCACCCAAGTATAGATTGTCCGGTAAAGGGTGCTACTGGGAAGAAGATGGATGATGAGTATCAGAACTTCTTGGCAGAGTTGGGAGGGACAGTTCCTGAATCAGCTACAAAGCAAACCAGCACATTGGCAATTGGTTCTGGCAATTCTGGGAGCAATCCTCCATGGTCTAACAATTCTGCCTCTGCTGGTGGTGCACCACAGGCTGGCTTAGGGGCGAATCCAATTAAAAAGGAAATTGATGATACAAATTTGTATATTGGGTATTTGCCACCCACTCTGGATGATGATGGTCTGATCCAATTGTTTCAACAGTTTGGTGAGATTGTCATGGCAAAAGTTATCAAGGATCGAATGACTAATTTAAGTAAAGGATACGGATTTGTTAAGTATGCTGATGTTCAAATGGCCAATAATGCAATTATGGCCATGAATGGTTATCGACTTGAGGGTCGAACTATTGCAGTAAGGGTTGCTGGTAAACCTCCTCAGCCTACAGTACCTCCTGGCCCACCTGCATCTGCTATGCCCGCATATCCTGCTTCAAGCCAGCCACTTGGAGCCTATCCATCCCAACAATATGCAGCCGGTGGTCCCCTTGGGAGTGCACCCGCTGGAAGTTATGCTGGTGCCCCAGTGCCATGGGCACCTACTGTTCCTCCTCCATATGCTCCTTATGCTCCTCCCCCGCCTGGGTCAAATATGTATCCCCCTATGCAAAGTCAACCTATGCCTCCTTATGGTGTTCAATATCCACCAGTGCAGTCAGGTCCACCTGGTGCCCCCATCCAGTCAGTAACTTCTAGTGAAGCCCAGCAGAATTACCCTCCAGGAGTGCAGTCGGACAATAGTTCCTCTACTCAATCTGTATTCGGAAGCTCAGTACCTGCAATGCCTCCAACTGCTCCACCTCCATATCCTGCACCTTACAGTTATCCACCTTATTACAATGCAGTTCCTCCACCACCTCCCCCTGTACCCATCTCGACTGCAGACCAATCCCAGAGCATTGGAAATGTGCCTTGGGCCAAGCATTGGAAATGTTCCATGGGCCACAAATCCTCCAGTGCCTCCTCCTGCTTCATCTTCAGAGAAGACAGCATATGGTGCAGATTCAGAGTATGA 2370 0.4844 MEALESNPSPPPLETITSSYAPPPDNFSSEYQNSSQQFEQPVTSSDYQISSKSRASDAQNTGSTFPNAFINGHTADDGDGGANNSSKPEVAKPLVSENGMTNNTQSGTDRDHSGGEEETTSRRRRRSRWDPQPESNDQSGGETGSGTRKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEADTPESLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQTSTLAIGSGNSGSNPPWSNNSASAGGAPQAGLGANPIKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMTNLSKGYGFVKYADVQMANNAIMAMNGYRLEGRTIAVRVAGKPPQPTVPPGPPASAMPAYPASSQPLGAYPSQQYAAGGPLGSAPAGSYAGAPVPWAPTVPPPYAPYAPPPPGSNMYPPMQSQPMPPYGVQYPPVQSGPPGAPIQSVTSSEAQQNYPPGVQSDNSSSTQSVFGSSVPAMPPTAPPPYPAPYSYPPYYNAVPPPPPPVPISTADQSQSIGNVPWAKHWKCSMGHKSSSASSCFIFREDSIWCRFRV 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1848 789 SUPERFAMILY RNA-binding domain, RBD 494 587 IPR035979 GO:0003676
Bisa12g1848 789 ProSiteProfiles Zinc finger CCHC-type profile. 383 397 IPR001878 GO:0003676|GO:0008270
Bisa12g1848 789 Pfam KH domain 276 349 IPR004088 GO:0003723
Bisa12g1848 789 MobiDBLite consensus disorder prediction 451 489 - -
Bisa12g1848 789 SUPERFAMILY Retrovirus zinc finger-like domains 379 425 IPR036875 GO:0003676|GO:0008270
Bisa12g1848 789 MobiDBLite consensus disorder prediction 10 70 - -
Bisa12g1848 789 Gene3D - 382 434 - -
Bisa12g1848 789 ProSiteProfiles Zinc finger CCHC-type profile. 409 423 IPR001878 GO:0003676|GO:0008270
Bisa12g1848 789 MobiDBLite consensus disorder prediction 451 480 - -
Bisa12g1848 789 SMART rrm1_1 499 572 IPR000504 GO:0003723
Bisa12g1848 789 MobiDBLite consensus disorder prediction 649 712 - -
Bisa12g1848 789 MobiDBLite consensus disorder prediction 306 327 - -
Bisa12g1848 789 Gene3D K Homology domain, type 1 253 381 IPR036612 GO:0003723
Bisa12g1848 789 MobiDBLite consensus disorder prediction 675 710 - -
Bisa12g1848 789 MobiDBLite consensus disorder prediction 110 132 - -
Bisa12g1848 789 FunFam splicing factor 1 381 434 - -
Bisa12g1848 789 Pfam Splicing factor 1 helix-hairpin domain 150 257 IPR032570 -
Bisa12g1848 789 Gene3D - 463 573 IPR012677 -
Bisa12g1848 789 CDD KH-I_BBP 260 353 - -
Bisa12g1848 789 MobiDBLite consensus disorder prediction 575 594 - -
Bisa12g1848 789 MobiDBLite consensus disorder prediction 649 674 - -
Bisa12g1848 789 ProSiteProfiles Type-1 KH domain profile. 276 348 - -
Bisa12g1848 789 SMART kh_6 261 353 IPR004087 GO:0003676
Bisa12g1848 789 FunFam splicing factor-like protein 1 478 580 - -
Bisa12g1848 789 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 498 576 IPR000504 GO:0003723
Bisa12g1848 789 Gene3D - 175 252 IPR047086 -
Bisa12g1848 789 MobiDBLite consensus disorder prediction 1 164 - -
Bisa12g1848 789 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 500 569 IPR000504 GO:0003723
Bisa12g1848 789 SMART c2hcfinal6 408 424 IPR001878 GO:0003676|GO:0008270
Bisa12g1848 789 SMART c2hcfinal6 382 398 IPR001878 GO:0003676|GO:0008270
Bisa12g1848 789 MobiDBLite consensus disorder prediction 144 160 - -
Bisa12g1848 789 PANTHER RNA-BINDING PROTEIN RELATED 114 618 IPR045071 -
Bisa12g1848 789 FunFam splicing factor-like protein 1 253 381 - -
Bisa12g1848 789 MobiDBLite consensus disorder prediction 577 593 - -
Bisa12g1848 789 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 261 387 IPR036612 GO:0003723
Bisa12g1848 789 MobiDBLite consensus disorder prediction 195 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1848 Bisa-ChrBisa12 40048571 40051008 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1848 498 629 Eukaryotic Initiation Factors Gene Family AT3G16380 30.216 9.55e-11 63.2