Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1806 ATGGCTTTCAAGTTTATAGCAATTTCGGCGATTTCTACGGTGTTAAGCTTTTTGGGTGTACAGTTTGGCTCAGAATTGTCGTTGAATAAACTATATACTGATGGACTAATTGGCAAGAATTTAATTCACTTGGAAAATGAGAACGCCAACCATGTCACTGAGCTGCTATTGGGGCCGTACACCACCATTGGGTTGTTGGCAAATTTTATGATCAACGCATTTATCCTTCTCAATCTTAGTCTCAAGACTATATTTTTTTCGGAGTTGTATCCTACTGAAACTCGGAAGCTGGTTGAGCGTCTCATTAATTATGTCATCTACAAGGGGACATTTCTGCCACTGATAGTGCCTTCAACAGTATATCAGGCATGCCTGTGGTCTATCTGGATGATAGTGCTATGTTCTTTAAAGATGTTTCAAGCGTTGGCCAGAGATCGTTTAGAGAGGTTGAATGCATCTCCATCTGCTAGACCCTGGACATATGGTCGTGTGTATTCAGCATTATTATTGGTTTTCTTAGTTGATGTATTTTGGATAAGACTATGTCTGGTGATATATAAAACATTCCAATCCTCTATGCTTCTGTTACTATTTTATGAGCCTTTCAGTATTGCTTTTGAGACCCTACAGGCTATTTTGGTTCATGGATTTCAATTACTTGATATATGGCTCCATCATTCGGCATGCAACAACACTGATAGTCAAAGGTCAAAACTGTTTGTCACATTAGCAGCAGGATCATTAATGGAATGGAAGGGGAGTCTTATTCGGAATTTGGGATTTATACTAGACATGGCAACCTATTTGATGGCACTTGGCCATTACTTGCATATTTGGTGGCTTCACGGCTTGGCTTTCCATCTTGTAGATGCAATGTTATTTCTAAACATACGTGCACTATTAAGCACAATTATAAATCGTATAAAAGGCTTTGTCAGGTTGAGGATAGCTCTAGGTGCACTTCATGCAGCTCTTCCTGATGCAACGGCTGAGGAGCTGAAAGCATATGATGATGAATGTGCTATTTGTAAGGAGCCCATGGCAAAGGCTAAAAAGCTAAACTGCAAACACCTTTTCCATCTTGCTTGTTTAAGATCTTGGTTGGATCAAGGTTTGACTGAGATATATACTTGTCCAACATGTCGAAAGCCACTTTTTGTTGGCCGGCCTGAAAATGAAGCAAACTTCAATGTGCAAGAATTATCAATTGAAGAACAGCATGCACAGCAAATAAGTGCAGGGCTAGATCGGCCAAACACTGGTAGACATACCATGGCTGCTGGATTATATCCCAACCAGACACCAAACACTATGGAAGGCATTCCTTGGAGTGGTGCAGGCTTGGATTCAGCTTGGTTGCATTCTTGGCCAAATCAAGGTGTTGATGGGGCTGGTCCATCTACTGCAATCAGATCAGTTGGATTAGAAAGAGTTCAAATGATGATGAGGCATCTTGCATCTGTTGGAGAAACCTATGCTCAGAGTGCCCTTGAAGATACTGCTTGGAGCCTTTGGCCTATTAATCCCTCTCAGGCTTCAGCAAGTGGTTCACCTATTCCTCCTCCTCATGGAAGATTTCCTGGGGCCTCTGGTAATTTACATATGAGGACTGCTTCACGTTCTGCAAATGAGAATTTGGCAAATATACTTGTTATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATACCGGATGACATAATTTTCCAGGACTTGCAGCGGACAAATTCTGTGTCGGTGACAGTGAATAATCTTCTCCAACTTTGA 1767 0.4154 MAFKFIAISAISTVLSFLGVQFGSELSLNKLYTDGLIGKNLIHLENENANHVTELLLGPYTTIGLLANFMINAFILLNLSLKTIFFSELYPTETRKLVERLINYVIYKGTFLPLIVPSTVYQACLWSIWMIVLCSLKMFQALARDRLERLNASPSARPWTYGRVYSALLLVFLVDVFWIRLCLVIYKTFQSSMLLLLFYEPFSIAFETLQAILVHGFQLLDIWLHHSACNNTDSQRSKLFVTLAAGSLMEWKGSLIRNLGFILDMATYLMALGHYLHIWWLHGLAFHLVDAMLFLNIRALLSTIINRIKGFVRLRIALGALHAALPDATAEELKAYDDECAICKEPMAKAKKLNCKHLFHLACLRSWLDQGLTEIYTCPTCRKPLFVGRPENEANFNVQELSIEEQHAQQISAGLDRPNTGRHTMAAGLYPNQTPNTMEGIPWSGAGLDSAWLHSWPNQGVDGAGPSTAIRSVGLERVQMMMRHLASVGETYAQSALEDTAWSLWPINPSQASASGSPIPPPHGRFPGASGNLHMRTASRSANENLANILVMAETVREVLPHIPDDIIFQDLQRTNSVSVTVNNLLQL 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1806 588 SUPERFAMILY RING/U-box 328 388 - -
Bisa12g1806 588 SMART ring_2 340 381 IPR001841 -
Bisa12g1806 588 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 389 IPR013083 -
Bisa12g1806 588 ProSiteProfiles Zinc finger RING-type profile. 340 382 IPR001841 -
Bisa12g1806 588 Pfam CUE domain 552 588 IPR003892 GO:0043130
Bisa12g1806 588 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 11 587 - -
Bisa12g1806 588 CDD CUE_RIN3_plant 549 586 IPR035667 -
Bisa12g1806 588 Gene3D - 547 587 - -
Bisa12g1806 588 ProSiteProfiles CUE domain profile. 548 588 IPR003892 GO:0043130
Bisa12g1806 588 Pfam Ring finger domain 338 382 IPR001841 -
Bisa12g1806 588 FunFam E3 ubiquitin protein ligase RIN2 313 392 - -
Bisa12g1806 588 CDD RING-H2_AMFR 338 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1806 Bisa-ChrBisa12 38608209 38634121 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1806 70 392 C3H Transcription Factor Family AT3G16090 28.571 2.35e-25 107