Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1715 ATGGCTGAAGATAAAGAAGAAGTAAAGACGTTTAAAGACTTGGGCTTGTCTGAGTCACTGGCGGAAGCTTGTCAAAGGTTAGGTTGGAAAAATCCATTAAAGATTCAAGCTGAAGCGATTCCTCTTGCATTGGAAGGAAAAGATGTTATAGGACTTGCACAAACAGGTTCTGGTAAGACTGGTGCTTTTGCTCTTCCCATCTTGCATGCCCTCTTAGAAGCACCACAACCGAGAGATTTTTTTGCTTGTGTTTTGTCTCCAACAAGAGAGCTTGCTATTCAAATCTCTGAGCAGTTTGAAGCTTTAGGTGCTGAAATTGGTGTTAAGTGTGCTGTGCTAGTTGGAGGAATTGACATGGTGCAGCAGTCTATTAAGATAGCGAAGCAACCTCATATTATTGTTGGGACGCCTGGACGTGTTTTAGATCACCTAAAAAACACTAAAGGTTTTACTCTTAATAGATTGAAATATTTGGTATTAGATGAGGCTGACAGGCTGTTAAATGAGGACTTTGAGGAATCACTCAATGAAATTTTGCAAGTTATTCCTCAACAACGAAGAACATTTTTGTTCTCTGCTACAATGACCAAGAAGGTCCAGAAGCTCCAAAGGGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCGGCATCTAAATATTCTACCGTTGATACACTGAAGCAGCAGTATTGCTTTTTGCCTGCTAAGCACAAGGATTGCTACCTTGTATATATTTTGACCGAAATGGCTAGAAGTACATCAATGGTTTTTACTCGTACATGTGATGCAACTCAGCTACTGGCATTGACGCTTAGAAATCTTGGTCTGAAAGCCATCCCAATTAATGGTCATATGAGCCAGGCAAAGAGAATTGGAGCCTTGAATAAGTTCAAGTCCGGAGATTGCAATATTCTCATTTGTACTGATGTGGCAAGTAGAGGCCTGGACATTCCTACTGTGGATATGGTTATCAACTACGATATACCTACTAACTCGAAGGATTATATACATCGTGTGGGAAGGACTGCACGCGCAGGGCGGTCTGGGGTTGCCATTTCCCTAGTGAATCAATATGAGCTGGAGTGGTACATTCAGATAGAGAAGCTTATAGGCAAGAAGCTACCAGAGTATCATGCACAAGAAGAGGAAGTTTTGCTTCTGGAAGAGCGTGTTAGTGAAGCCAAAAGATTGTCAAGAATGAAAATGAAGGAGGGTGGAGGGAAGAAGAGACGGGAGGGAGGTGATTCCGAAGAGGAAGAAGATATTGAGAAATACTTGGGTCGCAAGGATGGAAAATCATCCAAGACCAAGAAATTCAAAAGGAAATGA 1326 0.4155 MAEDKEEVKTFKDLGLSESLAEACQRLGWKNPLKIQAEAIPLALEGKDVIGLAQTGSGKTGAFALPILHALLEAPQPRDFFACVLSPTRELAIQISEQFEALGAEIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPGRVLDHLKNTKGFTLNRLKYLVLDEADRLLNEDFEESLNEILQVIPQQRRTFLFSATMTKKVQKLQRVCLRNPVKIEAASKYSTVDTLKQQYCFLPAKHKDCYLVYILTEMARSTSMVFTRTCDATQLLALTLRNLGLKAIPINGHMSQAKRIGALNKFKSGDCNILICTDVASRGLDIPTVDMVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEYHAQEEEVLLLEERVSEAKRLSRMKMKEGGGKKRREGGDSEEEEDIEKYLGRKDGKSSKTKKFKRK 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1715 441 Gene3D - 1 218 IPR027417 -
Bisa12g1715 441 Pfam DEAD/DEAH box helicase 34 202 IPR011545 GO:0003676|GO:0005524
Bisa12g1715 441 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 159 167 IPR000629 -
Bisa12g1715 441 SMART helicmild6 264 345 IPR001650 -
Bisa12g1715 441 Pfam Helicase conserved C-terminal domain 240 345 IPR001650 -
Bisa12g1715 441 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 240 384 IPR001650 -
Bisa12g1715 441 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 4 435 - -
Bisa12g1715 441 CDD SF2_C_DEAD 225 354 - -
Bisa12g1715 441 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 9 37 IPR014014 GO:0003724
Bisa12g1715 441 CDD DEADc_DDX47 10 214 IPR044765 GO:0005524
Bisa12g1715 441 MobiDBLite consensus disorder prediction 396 441 - -
Bisa12g1715 441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 366 IPR027417 -
Bisa12g1715 441 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 40 213 IPR014001 -
Bisa12g1715 441 SMART ultradead3 28 228 IPR014001 -
Bisa12g1715 441 MobiDBLite consensus disorder prediction 396 431 - -
Bisa12g1715 441 Coils Coil 376 396 - -
Bisa12g1715 441 Gene3D - 219 391 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1715 Bisa-ChrBisa12 33296691 33304184 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1715 6 375 Eukaryotic Initiation Factors Gene Family AT3G19760 31.551 5.15e-64 210