Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1683 ATGAAGAAGAATGGAGCTAAACTTGATTACGTCCTGTTCCTGTATTGGTCTCTAATTCAATTAAGTTTGAAGCAGGGCAGGGCACAGAGGAACGCAACAGTGCCTGTGAAAGTGGGAGTGGTGCTTGATGTTACCGAAACAAGTGGGAAGGTTGGATTGAGCTGCATCAACATGGCTCTCTCTGACTTTTACGTCTCTCATTCTCACTACAAAACCAGACTCGTCTTCAACATCAGGGACTCCCACAGAGATGTCGTTTCTGCAGCTGCTCAAGGTAGATGCCGTCACCGCCATCGTCCAAGCTTTTGGGTGGAAAGCTGCAGTGCCCATTTACGCAGAGAACAATTATGGGAGGGAGTGATACCCTTCTTAATCAGTGCTCTTCAGAAAGTCGATGTTCGCATTCCTTACCTCAGTGCTATTTCATCTTCAGCCTCTGATGAAGACATAAGCAGAGAGCTGTACAAGTTGATGACCATGCAAACCAGAGTATTCATTGTTCATGTCTCTTCTGATCTTGGCTCTACTCTCTTCACCATGGCACAAGAGATTGGAATGATGACCCAAGGCTATGCTTGGATATCAACGAGTGGTTTGGTCAATGAATTAATCTCCTTGAATCCCACAGTGAGAGAATCGATGCAAGGAGTATTGGGTGTGAGGACCTATGTTCCCAAATCAAAAGGGCTAGATGATTTTAAAGTTCGATGGAGAAGAAAATTCGTAAGAGATAATCCAACCCTTGATACAAATTTGAATGTTGCTGGGCTTTGGGCTTACGATGCAACCACAGCGTTAGCTATGGCTGTGGAGGAGGTCGGCACCACCAAGCTTGTCTTCTTGAAAAGCAATGCTTCCCACAACTCAACTGATCTTGAAAGGCTTGGAGTTTCACTAAATGGTGAGAATTTGCGTGAAGCCTTATCCAACACTAAATTCCATGGCTTGAGTGGAGAGTTCAATGTCAGTAATGGGCAATTGCAAGCATCCACGTTTGAGATCATAAATGTCATAGGTAATGGAGAAAGGACAATAGGATTTTGGACGTCACAAAATGGACTTGTTAGGAATTTGGTCTCAACAAAAAATACAAGCGCAAATTCTGGGTCTGAAAACAACCTAGCACCCATTATACGGCCAGGGGATACCTACTCTATTCCTAAGGGTTGGGTCATTCCAACGAATACCAAAAAAATGAGGATAGGTGTTCCAGTGAGAAATGATTACACTGAATTCGTGAAAATAGGACACGACTCAATCACTAATGCAACAGAGATCACAGGGTTTTGCATAGATGTGTTCAAGGCTGTGCTTGAAGTGCTGCCATATGCCTTACCATATGAATTTATCCCATTTGCAAAGCCTAATGGTGAGAGCGCAGGCACGTACGATGAGTTTATAAGCCAAGTCTATTATGGGAACTTTGATGCTGTTGTGGGTGATACAACAATTTTAGCAAATAGGTCAAACTATGTGGACTTCACATTGCCTTATACAGAATCTGGGGTAACAACTGGTTGTTCATTTGTATTTATTGGGTTTGTTGTGTGGGTGCTTGAACATCGAATTAACGAAAACTTCAGAGGTCCTCCATCACATCAAATTGGCACTAGCTTATGGTTTTCTTTCTCGACTGTGGTGTCTGCGCATCGAGAGAAATTGGTGAGTAACTTGGGTAGATTCGTGGTGATCATATGGATTTTTGTGGTTCTAATTCTGGTTCAAAGCTATACTGCAAGCCTAACATCGCTTTTAACAGCTAAGCAGCTCCACCCAACAGTTACAAATGTGAATCAACTCATAACTAATAGGCTGAATGTTGGTTGCAAGAAAGGTTCTTTTGAACAACGAATATTGAAGGACTTGGGTGTCAAAGATTACCAATTCAAATATTACAATTCAAGAGAGGGTTGCAATGAGCTTCTCACCAAAGGAAGTGGAAACGGTGGCATTGCTGCTGCATTCGGTGAAATCCCTTATGTTAAAATTTTCCTTGGAACGTATTGCTCCAAGTATTCCATGGTGGATCCTCAGTTTAAAACTGGGGGATTGGGCTTTGTGTTCCCCAGGGGGTCTCCACTTGTAGCTGATGTATCAAGGGCTATCCTAAATGTTACTCAAGGAGATAAAATAAAAACATTAGAGGATGCATGGTTTAAAAGAAGCAATTGTGTGGAGTCTGATGCATCGTTTTCTTCTAACAGTCTCGGCCTTGAGAGCTTTTGGGGCCTATTTCTCCTTGCAGTGGTTGCTTCCATGTTAGCACTCACTATCTTCGCCACTACATTCCTTTGTCAGCATAGACATATCTGGTTACACTGTGATCCCAATACGTCAATATGCAGACGAATTCAGATCTTACTGCGGATATTTGACCAAAAAGATCAGAGTTCTCACACTTTCAAGAAAACTAGCCTGCAAAATAGAACTCATTCGGAGATATCTTTTAGTGGAGATCAAGAGATGTTAAATACAGACTATAGTGATGCTAGTCCGAATGGTAATTCACCTGATCGAGACACAGAAATGACCATGATGCAAAACATATCGTCTTCCACAAGCAGTACTCTGGAAGCAGGCCACGCAACTTTCTTGCAGGCTCACCCTGTTGCTGTTCATGTTGAAGAAGTCAAAGGGGTTTTTGCGGCTTTGAAATCTTGGTCACTAACAGATTCGGTCCCATGCACATCTCACCGCTCCAAACAGAGGATCGAAGCCACTCTCGGAATTCTTGGGTCATGGAAGACTATGTTCAATTTCTCCTCCTTCGCCCTGCCCGCCAGCGCCGACGATGCCGTCTCCCGCATTCGAATCAAACTTCACTTCTTCCGAAAGAACTACACCGCAATCGTGATCCTCGGCCTCATTTCCTGGTTACTGATCTCACTCTTCGCCGCCGGAATCGCCGTTCGGTCGTTCATATGTTTCGGGCGATCCGGAGCAACGATAGCAATTTTCGGCCGTCCAATCGATGATCAAGAAAAGTCCTTAAGGGGCTCCGACAGCTCTTGGATGGCTGTGGGCTCCATCAAATATGCAGGGTCTACAATTATTCAAGGATTGTGGGCAGTTGCTGCACAATTGGAGAATGCCCCTCCCAAAAACACCAGAGTTTCCTACACTCTTTCATGTGCTCAGGCGCTCAGTGGGAAAGAAGGCAGAAGTTGTCATCATTGCCACGTGGGCTATAGCCAAGCGATTGACCATCGTCAAGCCAATCCGTCGTGTCGTGGTTTCTGTCGTGCCGTAGTTTCGAATGATGACAGCTTGGCTACAGATGAAAGGCTCCTCTGCAAAACGCAGAGCTTCGTTGAGTTATGTCTCTTTTCTCTTCTGCTTTTGAATTAG 3348 0.4418 MKKNGAKLDYVLFLYWSLIQLSLKQGRAQRNATVPVKVGVVLDVTETSGKVGLSCINMALSDFYVSHSHYKTRLVFNIRDSHRDVVSAAAQGRCRHRHRPSFWVESCSAHLRREQLWEGVIPFLISALQKVDVRIPYLSAISSSASDEDISRELYKLMTMQTRVFIVHVSSDLGSTLFTMAQEIGMMTQGYAWISTSGLVNELISLNPTVRESMQGVLGVRTYVPKSKGLDDFKVRWRRKFVRDNPTLDTNLNVAGLWAYDATTALAMAVEEVGTTKLVFLKSNASHNSTDLERLGVSLNGENLREALSNTKFHGLSGEFNVSNGQLQASTFEIINVIGNGERTIGFWTSQNGLVRNLVSTKNTSANSGSENNLAPIIRPGDTYSIPKGWVIPTNTKKMRIGVPVRNDYTEFVKIGHDSITNATEITGFCIDVFKAVLEVLPYALPYEFIPFAKPNGESAGTYDEFISQVYYGNFDAVVGDTTILANRSNYVDFTLPYTESGVTTGCSFVFIGFVVWVLEHRINENFRGPPSHQIGTSLWFSFSTVVSAHREKLVSNLGRFVVIIWIFVVLILVQSYTASLTSLLTAKQLHPTVTNVNQLITNRLNVGCKKGSFEQRILKDLGVKDYQFKYYNSREGCNELLTKGSGNGGIAAAFGEIPYVKIFLGTYCSKYSMVDPQFKTGGLGFVFPRGSPLVADVSRAILNVTQGDKIKTLEDAWFKRSNCVESDASFSSNSLGLESFWGLFLLAVVASMLALTIFATTFLCQHRHIWLHCDPNTSICRRIQILLRIFDQKDQSSHTFKKTSLQNRTHSEISFSGDQEMLNTDYSDASPNGNSPDRDTEMTMMQNISSSTSSTLEAGHATFLQAHPVAVHVEEVKGVFAALKSWSLTDSVPCTSHRSKQRIEATLGILGSWKTMFNFSSFALPASADDAVSRIRIKLHFFRKNYTAIVILGLISWLLISLFAAGIAVRSFICFGRSGATIAIFGRPIDDQEKSLRGSDSSWMAVGSIKYAGSTIIQGLWAVAAQLENAPPKNTRVSYTLSCAQALSGKEGRSCHHCHVGYSQAIDHRQANPSCRGFCRAVVSNDDSLATDERLLCKTQSFVELCLFSLLLLN 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1683 1115 Gene3D - 113 252 - -
Bisa12g1683 1115 FunFam Glutamate receptor 398 507 - -
Bisa12g1683 1115 Pfam Ligated ion channel L-glutamate- and glycine-binding site 417 504 IPR019594 GO:0004970|GO:0016020
Bisa12g1683 1115 Pfam Ligand-gated ion channel 503 751 IPR001320 GO:0015276|GO:0016020
Bisa12g1683 1115 SMART GluR_14 400 721 IPR001320 GO:0015276|GO:0016020
Bisa12g1683 1115 SUPERFAMILY Periplasmic binding protein-like II 380 721 - -
Bisa12g1683 1115 FunFam Glutamate receptor 492 620 - -
Bisa12g1683 1115 Gene3D - 612 723 - -
Bisa12g1683 1115 Gene3D - 398 509 - -
Bisa12g1683 1115 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 503 800 IPR015683 -
Bisa12g1683 1115 Pfam PRA1 family protein 913 994 IPR004895 -
Bisa12g1683 1115 Pfam Receptor family ligand binding region 115 339 IPR001828 -
Bisa12g1683 1115 Gene3D - 269 397 - -
Bisa12g1683 1115 FunFam Glutamate receptor 261 397 - -
Bisa12g1683 1115 FunFam Glutamate receptor 2.7 627 727 - -
Bisa12g1683 1115 SUPERFAMILY Periplasmic binding protein-like I 36 390 IPR028082 -
Bisa12g1683 1115 Pfam Bacterial extracellular solute-binding proteins, family 3 573 720 IPR001638 -
Bisa12g1683 1115 CDD GluR_Plant 397 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1683 Bisa-ChrBisa12 31932402 31939706 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1683 13 90 Ion Channels AT2G29120 44.444 9.47e-12 67.8