Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1677 ATGGAAAGAGGGTTAGGCCAAAACTCAGTTCCTTCTTCAGGTTCCTTGGACAAGTCCGCCATTTTGGATATTAAGCCCATGCGTACTTTGCTACCAGTGTTCCCAATGTCATCTCAGGCTCCTTCTTCCGGCCAGTGTCCTTCTGGGTTTTCTCCGTTTTTCCCTTTTGGTGGACCTCAAGGATCTCAACCATGGGCTGAGCACAATCAGCACACTCCTCCCTCTGGGGTCACACCAGGGGGTCACATGCCAGCTCCAATACGGTCATTTAGAAGCCCATTAGCTAGTAGTTCAACGAAAAGTGGAGCATCACCTGGGAGAAGCTCCAAGTCATCCAAGAAGAAGACTAAGAATGTTCAAGAGTCACCAATTGATTTAAGTTCTGTAGTTGGTATTAGCCTTGCCCAACGAGAAGACGGTAACCGGGAAGTGGTTAATCTTGTACTCTTGACATTTGATGCTCTTCGAAGAAGGCTCTGTCAACTTGACGATGCCAAGGAATTAAGCACAGGGTTAACCAGGCGTGCAGATTTAAAAGCTGGCAATACTTTGATGAGCAAAGGCATTCGAACAAACATGAGGAGGAGAGTAGGTGTGGTTCCCGGGGTTGAGATTGGGGACATTTTCTTTTTCAGAATGGAGTTATGTGTTGTGGGTTTACATGCCCAGTCCATGGGTGGGATTGACTACATGACTATCAAGGGTGAGTATGAGGAAGAGCCTGTGGCTTTAAGCATTGTTTCATCAGGAGAATATGATGACAATGCAGAGGATGATGATGTTTTAATTTATAGTGGTCAGAGTGGGAACTTCGGCAAGAGAGACAAGCTCGTGGCTGATCAGAAGCTTCAAAGGGGTAATCTTGCTTTGGAAAGAAGTTCACGACGCCACAATGAGGTAAGAGTCATCCGGGGCATGAGAGATGCTGTTAACCCAAATGCAAAAATCTATGTCTATGATGGTATGTACAAAATCCAAGATTCATGGATAGAAAAGGGGAAATCTGGCAGTGGTGTATTTAAGTACAAATTGGTGAGAATGCCTGGACAGGGTAGTGCCGTAGCTGTTTGGAGATCAATTCAGAAGTGGAAGACAGGCTTTCCTTCCAGGCCTGGATTTATTCTCTCAGACCTCTCTTCAGGAGCTGAGAGTATTCCTGTATCACTTGTCAATGATGTTGATCATGAGAGGATGCCTGCTGGTTTCACTTATTTCCATTCCCTCAGATATCCAAAATCGTTCAGCTTAATGCAGCCTTCTTATGGCTGCAACTGTACTAAAGCATGTGTTGCTGGTGATTTGAACTGCTCTTGTATTCGGAGAAACGAAGGTGATTTTCCATATACTGGCAATGGCACTCTAGTGAGTCGAAAGCCATTAGTTCATGAATGTGGCCCCACATGTCATTGTTTTCCAAACTGCAAAAATCGAGTATCCCAGACAGGTTTAAAGATCTACATGGAAGTATTCAAAACAAGGGATAGAGGATGGGGTCTTCGATCATTGGATCCTATTCGTGCTGGTGCTTTTATTTGTGAGTATGCAGGAGAAGTTGTTGACAAAAGCAAGTTAAATCAGAATGGGGGGATAGGAGTTAATGATGATTATGCTTTTGATACAAACCGTATTTATGCTCCATTCAAGTGGAATTATGAATCTAGGTTACTTGAAGAAGTTAGTTCAAATGATTCCAGTGAGGATTATGATATTCCGTCTCCTCTAGTTATAAGTGCTAAGAATTTTGGAAATGTGGCTAGATTCATGAATCATAGTTGCTCCCCAAATGTTTTCTGGCAGCCAATTGTATATGAAGAAAACAACCAATCCTTCCTTCATATTGCATTTTTCGCTCTCAGACACATTCCCCCTATGATAGAGCTGACATATGATTATGGCATTTTCCGTTCTGATCAAACTGAGGGTCGTAGCATGCCCAAAGGGAGAAAGAAATGCTTATGTGGATCATCCAAATGCCGTGGCTCTTTTGGTTGA 1992 0.4332 MERGLGQNSVPSSGSLDKSAILDIKPMRTLLPVFPMSSQAPSSGQCPSGFSPFFPFGGPQGSQPWAEHNQHTPPSGVTPGGHMPAPIRSFRSPLASSSTKSGASPGRSSKSSKKKTKNVQESPIDLSSVVGISLAQREDGNREVVNLVLLTFDALRRRLCQLDDAKELSTGLTRRADLKAGNTLMSKGIRTNMRRRVGVVPGVEIGDIFFFRMELCVVGLHAQSMGGIDYMTIKGEYEEEPVALSIVSSGEYDDNAEDDDVLIYSGQSGNFGKRDKLVADQKLQRGNLALERSSRRHNEVRVIRGMRDAVNPNAKIYVYDGMYKIQDSWIEKGKSGSGVFKYKLVRMPGQGSAVAVWRSIQKWKTGFPSRPGFILSDLSSGAESIPVSLVNDVDHERMPAGFTYFHSLRYPKSFSLMQPSYGCNCTKACVAGDLNCSCIRRNEGDFPYTGNGTLVSRKPLVHECGPTCHCFPNCKNRVSQTGLKIYMEVFKTRDRGWGLRSLDPIRAGAFICEYAGEVVDKSKLNQNGGIGVNDDYAFDTNRIYAPFKWNYESRLLEEVSSNDSSEDYDIPSPLVISAKNFGNVARFMNHSCSPNVFWQPIVYEENNQSFLHIAFFALRHIPPMIELTYDYGIFRSDQTEGRSMPKGRKKCLCGSSKCRGSFG 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1677 663 ProSiteProfiles Pre-SET domain profile. 421 482 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Bisa12g1677 663 Pfam Pre-SET motif 379 477 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Bisa12g1677 663 SUPERFAMILY PUA domain-like 180 368 IPR015947 -
Bisa12g1677 663 Pfam SET domain 496 632 IPR001214 GO:0005515
Bisa12g1677 663 SUPERFAMILY SET domain 384 660 IPR046341 -
Bisa12g1677 663 SMART set_7 485 638 IPR001214 GO:0005515
Bisa12g1677 663 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 181 365 - -
Bisa12g1677 663 ProSiteProfiles Post-SET domain profile. 647 663 IPR003616 -
Bisa12g1677 663 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 66 657 - -
Bisa12g1677 663 Pfam SAD/SRA domain 197 350 IPR003105 -
Bisa12g1677 663 ProSiteProfiles YDG domain profile. 198 346 IPR003105 -
Bisa12g1677 663 MobiDBLite consensus disorder prediction 36 122 - -
Bisa12g1677 663 ProSiteProfiles SET domain profile. 481 632 IPR001214 GO:0005515
Bisa12g1677 663 Gene3D - 181 364 IPR036987 -
Bisa12g1677 663 SMART preset_2 375 469 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Bisa12g1677 663 SMART G9a_1 193 350 IPR003105 -
Bisa12g1677 663 MobiDBLite consensus disorder prediction 91 109 - -
Bisa12g1677 663 Gene3D SET domain 368 662 IPR046341 -
Bisa12g1677 663 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 663 IPR025794 GO:0016571
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1677 Bisa-ChrBisa12 31612829 31614820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1677 17 663 Su(var)3-9 homologs AT5G04940 55.162 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Bisa12g1677 SAD_SRA 4.8e-48 CL0178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g1677 12 31612829 31614820 Bisa02g2459 02 61594849 61596873 CCT