Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1674 ATGAGTCGGACGTTAAATGGGATTGAAGACAGGGAGCTCCCCATGGATAAGACTGGGCCACAGTTGAATGATGAGGCTAATGGAGGAATTGCTGCTGGAGTTCTTCTAAAGAAAGGGCCATGGACATCTGCTGAAGACGCTATTTTGGTGGACTATGTCAAGAAACATGGGGAAGGGAACTGGAATGCTGTTCAGAAGCACTCAGGCCTGTCCCGTTGTGGCAAAAGCTGCCGGCTCCGGTGGGCTAATCACCTAAGGCCAAATTTAAAGAAAGGGGCATTTACTGCAGAAGAAGAGCGGTTGATTGCTGAACTCCATGCCAAGATGGGGAATAAATGGGCACGCATGGCGGCACATTTGCCTGGTCGTACTGATAATGAGATAAAGAACTACTGGAATACCAGGATAAAGAGACGTCAACGGGCTGGCTTGCCACTATATCCTCCTGAAGTGTGTTTGCAAGAATTGCAAGAGAGTCAGCATGGCCAAAACACTGTTGGAAATAATGATTTTCTGCAGGAAAGCAGTTATGAGATACATGATACTGTATTTGACAGTCTGAATGCAAATCAGGAAGTCTTACCTTATATGCTGGAGCTTCCTGACATTCCTGCTAATAGCATTCTGCTGAAAGGTTTTGGTTCTTCTCAGTATTGTAACTTTTTGCCATCAACATTGCCTTACCATAAGTGTCTTCAGGAGTCAACAATGGCATTTCTTGGTTCATGTGGTATGAATGGAAATGGGTTTTATCCTCTCGACCATATTCAGGAGCATACTTCTGATAAGATTGCTCAATCATTTGGATATCATTCTCCCCTTGATCCCGGTGCCTCCTCACAAAACTCACTGTGTTACAGCCATTCACTTTCAAATGGCAATTCCTCTACTTCTAAGCCGACTTTTGAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAACTGATTTAGGTAGCTGGAGTACATCTCCACCGCCTCCTCTGATTGAATCAGTTGATACTTTCATACATGCTCCTCTGCCAACTAGTGCACTGGAGTCAGATTCTTCTTCACCATATAATAGTGGCCTGCTGGATGCTTTACTTTATCAGGCTAAGACTCTCAACAGTTCAAAGAATCATTATTCTGACAAGAGTTCGAACTCATCTACTGCAACCCCTGGTGATAGAGCTGACAGTTCCACTTTGCATATGTATGAGACAGAATGTGAAGATTATGCAGACTGTGTTTCTCCATTTGGAGCAACTTCAATCTTGAATGAATGTCTTGATCTGAGTGCCAAAGGAAATTCATTAGATGAACTGCCAGCTGCACAGACCTTCAGTGGCAACATTGTGGAATCAGAATCTGGTTATCAGGTTTTGACCCCCAACAGTGAAAACCAAACCATGTCGATGCTGAATATCACCCGACCAGATGTTTTGCTTGCTTCAGATTGGCTTCAGCAGGGTTCTGGGTGTGGCAAGAACCAGGCCATCATGACCGATTCCATAGCAACCCTCCTTGGTGATGATTTGACCACCAGCTACAAGCACATGACTGCAGAAACTTCGACATTTTGTCAAGCGTGGGGTCTTGATTCTTGCACATGGAATAACATGCCTGCTGTCTGTCAAATGTCCGATCTTCCTTGA 1641 0.4461 MSRTLNGIEDRELPMDKTGPQLNDEANGGIAAGVLLKKGPWTSAEDAILVDYVKKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEERLIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRRQRAGLPLYPPEVCLQELQESQHGQNTVGNNDFLQESSYEIHDTVFDSLNANQEVLPYMLELPDIPANSILLKGFGSSQYCNFLPSTLPYHKCLQESTMAFLGSCGMNGNGFYPLDHIQEHTSDKIAQSFGYHSPLDPGASSQNSLCYSHSLSNGNSSTSKPTFEAVKLELPSLQYPETDLGSWSTSPPPPLIESVDTFIHAPLPTSALESDSSSPYNSGLLDALLYQAKTLNSSKNHYSDKSSNSSTATPGDRADSSTLHMYETECEDYADCVSPFGATSILNECLDLSAKGNSLDELPAAQTFSGNIVESESGYQVLTPNSENQTMSMLNITRPDVLLASDWLQQGSGCGKNQAIMTDSIATLLGDDLTTSYKHMTAETSTFCQAWGLDSCTWNNMPAVCQMSDLP 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1674 546 FunFam Transcription factor GAMYB 93 139 - -
Bisa12g1674 546 Gene3D - 93 139 - -
Bisa12g1674 546 Pfam Myb-like DNA-binding domain 38 85 IPR001005 -
Bisa12g1674 546 Pfam Myb-like DNA-binding domain 91 134 IPR001005 -
Bisa12g1674 546 ProSiteProfiles Myb-like domain profile. 36 85 IPR001005 -
Bisa12g1674 546 CDD SANT 40 85 IPR001005 -
Bisa12g1674 546 SMART sant 37 87 IPR001005 -
Bisa12g1674 546 SMART sant 90 138 IPR001005 -
Bisa12g1674 546 SUPERFAMILY Homeodomain-like 37 132 IPR009057 -
Bisa12g1674 546 FunFam MYB-related transcription factor 37 90 - -
Bisa12g1674 546 Gene3D - 37 90 - -
Bisa12g1674 546 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Bisa12g1674 546 MobiDBLite consensus disorder prediction 1 24 - -
Bisa12g1674 546 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 140 IPR017930 -
Bisa12g1674 546 CDD SANT 93 134 IPR001005 -
Bisa12g1674 546 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 85 IPR017930 -
Bisa12g1674 546 MobiDBLite consensus disorder prediction 1 18 - -
Bisa12g1674 546 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 26 520 - -
Bisa12g1674 546 MobiDBLite consensus disorder prediction 374 393 - -
Bisa12g1674 546 MobiDBLite consensus disorder prediction 374 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1674 Bisa-ChrBisa12 31550331 31554403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1674 33 546 MYB Transcription Factor Family AT5G06100 44.340 3.01e-133 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bisa12g1674 Myb_DNA-binding 5e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g1674 12 31550331 31554403 Bisa02g2463 02 61737438 61750029 CCT