Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1670 ATGTCCTTTGAGTCTCAAAGGGTAGTGGTGATCCAGGATGCATCAAGAGATGTAAGTATAAGTGCAATAAAAAAAGCATTGAAAAAGATATCTCTTAAGCCTGGAGATGAGCTTACACTTCTTGCAATTCTTGTGTACAAGATGGAGTTGGATTCCAGTTCATCCTTTGTTGCAATAGACCCGAAAATTCCAGATGAAGAAGTTGCCAAGAAAAAGGAAGAATATGACAAGAGTTTACAGATCAAGGAACTCTCTGATTACTGCAAAACAAAAAATAGTGTATTCAACATAGAGGTGCTTACGGGCCCTTCTCCAAAGGTTGCTTCTGATGCTGCCAGAAAATTTAGGGCAACATGGTTGATACTTGACAAAGAAATGACCAAAGATAAAAGGCACTTCATGGACAACCTTGCTTGTGGTATGTATAGGATAAGGAATCACAATAGGGTTCAAAAGTTGAGAAAGCCAAAATCAACAGAGAACCCTAAATCACGTGATAAAAAACCAGAGCATGTGAGATATATGGAAATGATACCAGGAAGCGCAGAGGAAGAATTTTCTTTTAAGAGACCTAGATCATCTTCAAGTGAGCAACTCATGGCAACTTCAATTTCAGCTCTTCAAAATAACGAAGCTTCAACTTCAAAACAACAACAGGCACAAAATCCTACAACGACTAAACACAAAACAGCAGGGACACAATCACTATTCTACATTCCAGAGGGCAAAAAGATAGGCCAAACAGAAGCACCACAGCCTGAGATGAAGGAAGAGTTTACAAACCCAGTTTGCTCGGTGTGCAAGAACACGAGACCGAAAGTCATATCGCAAAGAGACTACAGTTATTCAGAGCTTTACACAGCCACACAGGGATTTTCCCAGAAGAATTTTCTATCAGAAGGTGGTTTTGGATCGGTCTACAAAGGACAGATAGATGGAATGACAATTGCAGTGAAGCAACACAAGTGTGCAAGCCTCCAAGGAGAGAAGGAGTTTAAGTCTGAAGTTAATCTTCTTAGCAAAGCGAGACATGAGAATGTGGTCATGCTGCTAGGGTCATGCTCAGAAGGAAATAATAGGCTTCTTGTTTACGAATACGTATGCAACGGCTCGTTGGATCGGCATCTATCACAACACTCTCGTGCTCCTCTTAGTTGGGAAGATAGGATTAAAGTGGCAAGTGGATGTGCCAAAGGCTTACTATATTTGCATGAGAATAACATCATACACAGAGACATGAGACCAAATAATATCCTCATAACACATGATCATCAACCACTGCTAGGAGACTTTGGGTTGGCGAGAAGTCAAAATCAAGACTCCATACACTCCACAGATGTTGTGGGGACATTGGGATATATGGCACCAGAATATGCAGAATATGGCAAAGTCTCAACCAAGATAGATGCGTATTCTTTTGGGGTAACCCTACTGCAGCTCATAACAGGAATGAGGACAACAGACCAAAGACTCGGCGGAAGAAGTCTTGTGGGATGGGCAAGACCACTACTAAGAGAGAGGAATTATCCAGATTTAATTGATGAAAGGATAATGAATTCTCATGATTGCCATCAACTATTTTGGATGGTTCGAATAGCAGAAAAATGCTTGAGCAGGGACCCTCATAAGAGATTAAATATGGCTGCGGTGGTCAATGCCTTGAATCATATAGTGGAGGGCCAAGTATGTGGGATCATAAACAGAGATTGCTCTCCAGCAAGGTCTGAATCATTCTACACCACATCAGACGATGATGGTGAATCCTTAGAAGATGAAATGAACAAGTCAGAAGGCGAGTCAGAAAGTCACAATAGAGAATCCACATTAAGTAGTAGCAACATGAGTCAGATCATTTTAGGACTCCAAATCCCTCCTTCCCCTCCATTGGACATCACTCCTTCAAGTAGGTCAAGTACAAATGGTAAGGCTGAAGACCAATCAATTATGAACATGTAA 1956 0.411 MSFESQRVVVIQDASRDVSISAIKKALKKISLKPGDELTLLAILVYKMELDSSSSFVAIDPKIPDEEVAKKKEEYDKSLQIKELSDYCKTKNSVFNIEVLTGPSPKVASDAARKFRATWLILDKEMTKDKRHFMDNLACGMYRIRNHNRVQKLRKPKSTENPKSRDKKPEHVRYMEMIPGSAEEEFSFKRPRSSSSEQLMATSISALQNNEASTSKQQQAQNPTTTKHKTAGTQSLFYIPEGKKIGQTEAPQPEMKEEFTNPVCSVCKNTRPKVISQRDYSYSELYTATQGFSQKNFLSEGGFGSVYKGQIDGMTIAVKQHKCASLQGEKEFKSEVNLLSKARHENVVMLLGSCSEGNNRLLVYEYVCNGSLDRHLSQHSRAPLSWEDRIKVASGCAKGLLYLHENNIIHRDMRPNNILITHDHQPLLGDFGLARSQNQDSIHSTDVVGTLGYMAPEYAEYGKVSTKIDAYSFGVTLLQLITGMRTTDQRLGGRSLVGWARPLLRERNYPDLIDERIMNSHDCHQLFWMVRIAEKCLSRDPHKRLNMAAVVNALNHIVEGQVCGIINRDCSPARSESFYTTSDDDGESLEDEMNKSEGESESHNRESTLSSSNMSQIILGLQIPPSPPLDITPSSRSSTNGKAEDQSIMNM 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1670 651 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 367 569 - -
Bisa12g1670 651 MobiDBLite consensus disorder prediction 632 651 - -
Bisa12g1670 651 Gene3D Transferase(Phosphotransferase) domain 1 367 567 - -
Bisa12g1670 651 MobiDBLite consensus disorder prediction 605 620 - -
Bisa12g1670 651 PANTHER OS01G0253100 PROTEIN 171 559 - -
Bisa12g1670 651 MobiDBLite consensus disorder prediction 576 651 - -
Bisa12g1670 651 SUPERFAMILY Protein kinase-like (PK-like) 274 554 IPR011009 -
Bisa12g1670 651 Gene3D Phosphorylase Kinase; domain 1 265 366 - -
Bisa12g1670 651 ProSitePatterns Tyrosine protein kinases specific active-site signature. 408 420 IPR008266 GO:0004672|GO:0006468
Bisa12g1670 651 FunFam Proline-rich receptor-like protein kinase PERK8 254 366 - -
Bisa12g1670 651 Pfam Protein tyrosine and serine/threonine kinase 295 554 IPR001245 GO:0004672|GO:0006468
Bisa12g1670 651 MobiDBLite consensus disorder prediction 153 172 - -
Bisa12g1670 651 ProSiteProfiles Protein kinase domain profile. 292 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa12g1670 651 MobiDBLite consensus disorder prediction 207 232 - -
Bisa12g1670 651 Coils Coil 586 606 - -
Bisa12g1670 651 MobiDBLite consensus disorder prediction 148 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1670 Bisa-ChrBisa12 31451135 31467098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1670 274 578 Trihelix Transcription Factor Family AT5G38560 44.828 1.15e-77 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Bisa12g1670 PK_Tyr_Ser-Thr 3.3e-47 CL0016