Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1619 ATGAGTCCACCGACTGTGGTGAAGATGGAGGATGGCAAGCCTTCAGTTACCCCAGCCAACAATTTGCAGTTTGATGGCGAACACCGTGACGCTGTTGAGTCTAGATTTACAAAGTTCTGCAAGGATGGGCTATCATTGGATCAGAAAAGTTTTACACAAGCAATTAAGCTGTTTGGCGAAACCAAGCACCTTCTACTGACAAATATCTCATCTATTGGGATTGGAATGTTAGAAGAAGCAAGATATTGGTTTTCATTTATTTTATACTCCATCAAGAGGTTGGCTGAGAAAAAGTCAGACAGTGAGAAGGAAGAGACTGACTACAAGGGGCTTACCTTATGCCAGATATTAAGAGCAGCGAAGCTTAACATTGCAGATTTTCTTAAAGAACTTCCTCAGTTTGTTGTTAAGACTGGTCCAATTTTGAGTTCTCTATATGGCACAGATTGGGAAAAAAGGCTTGAGGTGAATGAGATGGAAGCCAATGTTCGTCACTTAAGCATTCTTAGCAAGTACTATAAACGTGCTTTTGGAGAGTTCTTCCTAGAAAAAGATGCAAATGTTGAAAATCACTCATCTCTTACTGTTCATGCATCTGAATATCATCGTTTTGGGTGGTTACTTTTCTTGGCACTTCGTGTGCACACTTTCAGCCGTTTTAAAGACTTGGTAACTTACACCACTGGTTTAGTTTCTATTTTGGCCATCTTGATTATTCATGTTCCTGCTCGTTTCCGAAATTTCAACATTCATGACTCTTCACGCTTTGTTAGGAAAGGTGGCAAAGGAGTGGACCTCCCTGCATCGCTTTGCAACATGTATCACGCTTCAGAAGATGAGTTGAGGAAAACCATGGAGAAAGCCAACAATTTAATTGCAGATATGTTGAAGAAGAAGCCTTCTTTGGCTTCCGAATTCAAAATTGAAAATCTAGAGAATTTTGATGCAGATGGTTTGATTTATTTTAAAGACCTATTGGAGGAGTCTTATCTGCAATCTGGTTTAAATATTTTAGAAAAAGATTATGACTACGCAATTCATAACAATTTTGATCTGGATGAGAGGATATTTATTGATGAGGAGGACAGCTTGCTAGCTTCGGGAAGCTTGTCAGAAAGTGCTATGCCATCAAGGGGTGTCAAGAGGAAATTTGATTTGTTGGCATCACCTCCGAAGACAATGGCAAGTCCACTTTTTCCTCACCGCTCTCCTGCATCTCACACAAATGGCATTCTGGGTAGCCCAAATTCAAAGATGGCAGCCACCCCCGTAAGCACTGCAATGACTACTGCAAAGTGGCTTCGTTCCGTCATCTCTCCACTTGCATCAAAGCCCTCACCAGATCTGGAGAAATTCCTGACATCTTGTGATAGGGACGTTACAAATGATGTGGTGAGCAGGGCACAGATTATATTGCAGGCTATATTTCCAAGTAGTCCTTTGGGAGAACGGTGTGTAACTGGAAATCTCCAAAGTGCAAACTTCATGGATAATGTCTGGGCAGAACAGCGGAGACTGGAAGCCCTTAAGTTATATTATAGGGTTTTGGAAGCAATGTGTAAAGCAGAAGCCCAAATACTGCATGCAACTAATTTAACATCGCTATTAACAAATGAGAGGTTCCATAGATGTATGCTTGCATGCTCTGCGGAGCTAGTCCTGGCAACACATAAGACTGTAACAATGTTGTTTCCTGCAGTATTGGAGACAACTGGAATAACAGCTTTTGATCTTAGCAAGGTAATAGAAAGTTTCATTAGACATGAGGAATCCCTCCCCAGAGAATTGAGGCGCCATCTGAATTCATTGGAAGAACGACTTTTGGAGAGCTTGGTCTGGGAAAAGGGTTCTTCAATGTATAATTCTTTGACAGTTGCTAGACCTGCCCTCTCTGCAGAAATTAATCGTCTTGGATTGTTAGCTGAACCAATGCCATCATTAGATGCAATTACACTGCATATTAACTTCTCTTGTGGAGGGTTGCCCCCTTTGGCTTCCTCACAGAAGCTTGAGAATCCACCAGGTCAGAATGGGGATACTAGGTCTCCAAAGAGACTCTGCACAGAATATCGAAGTGTACAAGCAGAACGAAACTCTTTTACGTCACCAGCAAAAGATCGGTTTCTGCCTTTTGGCAACCTCAAGTCAAAGCTACCCCCACCTCCTTTGCAGTCAGCATTTGCCAGTCCAACTAGACCAATTCCAGGAGGGGGAGGAGAAACATGTGCAGAAACTGGAATTAGTATTTTTTTTGGCAAGATCATTAAGTTAGCAGCTGTCAGAATAAGTGGCATGGTTGAAGGGCTACAATTATCTCAGCAGATAAGGGAGAATATTTACTGTCTATTTCAAAAAATCCTAAATCAACAGACATCTCTCTTTTTCAACCGCCATATTGACCAAATAATTCTCTGCTGTTTCTATGGAGTTGCTAAGATTTCTCAACTGAGCCTAACTTTTAGGGAGATCATTTACAAGTATAGAAAGCAACCACAATGCAAGCCACTAGTTTTTCGCAGTGTGTTTGATGATCGGTCATCAGCACACCGTAATGGGAGAACAGGACAGGAGCACATCGATATCATTACTTTTTACAATAAAAAATTCATTCCCTCTGTAAAGCCTCTGTTGGTTGAGCTTGGTCCTGGGGAAACAACTACAAAATGTAATAGGATACCTGAAGTCACCACTAACAACAACGGTCATTTAGCTCAATGTCCTGGATCTCCTAAAATATCCCCATTTCCAAGCCTTCCTGATATGTCCCCAAAAAAAGTGTCTGCCACACATAATGTATATGTCTCTCCATTACGATCATCCAAGATGGATGTCCTTTTATCACATAGTTCAAAAAGCTACTACGCCTGTGTTGGGGAGAGTACTCATGCATATCAGAGCCCTTCAAAAGACCTGACTGCCATCAATAACCGTTTGAATGGTACTCGGAAGGTCCGAGGTCCCCTGAACTTTGATGATGTGGATGTTGGCTTGGTTAGTGACTCTATGGTTGCAAACAGCCTCAATCTTCAGAATGGCAGTAGTGCTTCCTCCTCAGGTGCAGCATTGAAGTCTGAGCAACCTGACTCTTAA 3090 0.4181 MSPPTVVKMEDGKPSVTPANNLQFDGEHRDAVESRFTKFCKDGLSLDQKSFTQAIKLFGETKHLLLTNISSIGIGMLEEARYWFSFILYSIKRLAEKKSDSEKEETDYKGLTLCQILRAAKLNIADFLKELPQFVVKTGPILSSLYGTDWEKRLEVNEMEANVRHLSILSKYYKRAFGEFFLEKDANVENHSSLTVHASEYHRFGWLLFLALRVHTFSRFKDLVTYTTGLVSILAILIIHVPARFRNFNIHDSSRFVRKGGKGVDLPASLCNMYHASEDELRKTMEKANNLIADMLKKKPSLASEFKIENLENFDADGLIYFKDLLEESYLQSGLNILEKDYDYAIHNNFDLDERIFIDEEDSLLASGSLSESAMPSRGVKRKFDLLASPPKTMASPLFPHRSPASHTNGILGSPNSKMAATPVSTAMTTAKWLRSVISPLASKPSPDLEKFLTSCDRDVTNDVVSRAQIILQAIFPSSPLGERCVTGNLQSANFMDNVWAEQRRLEALKLYYRVLEAMCKAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLETTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESLVWEKGSSMYNSLTVARPALSAEINRLGLLAEPMPSLDAITLHINFSCGGLPPLASSQKLENPPGQNGDTRSPKRLCTEYRSVQAERNSFTSPAKDRFLPFGNLKSKLPPPPLQSAFASPTRPIPGGGGETCAETGISIFFGKIIKLAAVRISGMVEGLQLSQQIRENIYCLFQKILNQQTSLFFNRHIDQIILCCFYGVAKISQLSLTFREIIYKYRKQPQCKPLVFRSVFDDRSSAHRNGRTGQEHIDIITFYNKKFIPSVKPLLVELGPGETTTKCNRIPEVTTNNNGHLAQCPGSPKISPFPSLPDMSPKKVSATHNVYVSPLRSSKMDVLLSHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGTRKVRGPLNFDDVDVGLVSDSMVANSLNLQNGSSASSSGAALKSEQPDS 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1619 1029 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 30 1027 IPR028309 GO:0006357|GO:0051726
Bisa12g1619 1029 Coils Coil 278 298 - -
Bisa12g1619 1029 MobiDBLite consensus disorder prediction 1 22 - -
Bisa12g1619 1029 Pfam Retinoblastoma-associated protein B domain 747 874 IPR002719 GO:0005634|GO:0051726
Bisa12g1619 1029 FunFam Retinoblastoma-related protein 1 425 613 - -
Bisa12g1619 1029 SUPERFAMILY Cyclin-like 745 917 IPR036915 -
Bisa12g1619 1029 FunFam Retinoblastoma-related protein 1 201 359 - -
Bisa12g1619 1029 Pfam Domain of unknown function (DUF3452) 108 240 IPR024599 -
Bisa12g1619 1029 Gene3D - 425 613 - -
Bisa12g1619 1029 SMART DUF3452_2 94 240 IPR024599 -
Bisa12g1619 1029 FunFam Retinoblastoma-related protein 1 698 910 - -
Bisa12g1619 1029 SMART RB_A_2 422 623 IPR002720 GO:0005634|GO:0051726
Bisa12g1619 1029 Gene3D - 201 359 - -
Bisa12g1619 1029 Pfam Retinoblastoma-associated protein A domain 422 623 IPR002720 GO:0005634|GO:0051726
Bisa12g1619 1029 MobiDBLite consensus disorder prediction 1009 1029 - -
Bisa12g1619 1029 SUPERFAMILY Cyclin-like 430 625 IPR036915 -
Bisa12g1619 1029 Gene3D - 689 899 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1619 Bisa-ChrBisa12 30253902 30260744 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1619 9 1029 Core Cell Cycle Gene Families AT3G12280 67.992 0.0 1360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Bisa12g1619 RB_A 1.4e-64 CL0065