Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1590 ATGTGTGAGAAAAATACTGAAGGGGCGAGGGAAGCAGGAGAAAGGCCAATTTTCAGAGATATTAGACGCTATTTCTGTGAATATTGTGGCATCTGTAGGTCCAAGAAAGCCTTAATAACCGCTCATATCAATGCCCAGCACAAGGAGGAGGTGGAGAAAGAAAGAGTTGATAGGGCAAGCAAAGCAGAGGATATAAAATCCAACACTTGCAAGGAATGTGGCGCTAGTTTTAAGAAACCTGCCCACTTAATGCAACACATGCAAAGCCATTCAGTAGAGATAAAGAACTCCAAAATGCATGAGGCATCATATTTTAACCTGATGGATCAGTACCAGGCAGGGAGACCTCCTGAGAAGCTCCATCAGGGTGCCTCTCTCACGCTCTGTCAAGGCATTTTAGATTTGGGAATTCTCGCTTTAACACTTATTTTATGGTTCCAGAGGCCATATGTGTGTACCATTGAAGATTGCCAAGCAAGTTACAGAAGAAAGGACCATTTGACTCGTCATCTTCTTCAGCATCAAGGGAAAACTTTCAAATGTCCAATTGAGAATTGCAACCGTGACTTTGTTTTCCAAGGAAATATGACAAGACATGTCAAAGAATTTCATGATGAGAATTCCACCTCTACAACTGCTGAAAGCCAGAAACAGCATTTTTGCCCAGAAATTGGATGTGGAAAGGTTTTTAAATATGCATCACAGCTACAAAAGCATGAAAATTCTCATGTTAAGCTGGAGTCAATAGAGGTAGTTTGCTTAGATCCTGATTGTATGAAGCAATTCACTAATGTCCAATGCCTTCAAGAACATATTAAATCCTGCCACCAATATGTGACCTGTGAGATTTGTAGCAAAAAGCAACTGAAGAAGAATATTAAGCGGCACCTTCGAATGCATGAAAATGGTAGTTCATCGGAGGCATTTAAATGTGAATGCAAGGGGTGTAGCTGCACATTCTCAAGTAAATCCAATCTTCAGAAGCATGTGAAGGCTGTGCACTTTGAAGACAAACCTTTTGTTTGTGGCTTTCCTAATTGTGGCATGAGATTTTCTTACAAACACGTGAGAGATAACCATGAAAAAACCGGGTCTCATGTCTATACCATTGGGGATTTTGAAGACGCTGACGAGCAATTTAGGTCAAGGCCAAGGGGAGGGCGTAAGAGGCAGTGTCCTACAGTTGAAATGTTAGTTAGGAAGAGAGTTACTCCACCCAGTCAACTAGATCACTGGTTACTCATGCACGACGATGAGTAG 1260 0.4159 MCEKNTEGAREAGERPIFRDIRRYFCEYCGICRSKKALITAHINAQHKEEVEKERVDRASKAEDIKSNTCKECGASFKKPAHLMQHMQSHSVEIKNSKMHEASYFNLMDQYQAGRPPEKLHQGASLTLCQGILDLGILALTLILWFQRPYVCTIEDCQASYRRKDHLTRHLLQHQGKTFKCPIENCNRDFVFQGNMTRHVKEFHDENSTSTTAESQKQHFCPEIGCGKVFKYASQLQKHENSHVKLESIEVVCLDPDCMKQFTNVQCLQEHIKSCHQYVTCEICSKKQLKKNIKRHLRMHENGSSSEAFKCECKGCSCTFSSKSNLQKHVKAVHFEDKPFVCGFPNCGMRFSYKHVRDNHEKTGSHVYTIGDFEDADEQFRSRPRGGRKRQCPTVEMLVRKRVTPPSQLDHWLLMHDDE 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1590 419 Gene3D Classic Zinc Finger 6 94 - -
Bisa12g1590 419 ProSitePatterns Zinc finger C2H2 type domain signature. 311 334 IPR013087 -
Bisa12g1590 419 Pfam Zinc finger, C2H2 type 312 334 IPR013087 -
Bisa12g1590 419 Pfam Zinc finger, C2H2 type 150 174 IPR013087 -
Bisa12g1590 419 Pfam Zinc finger, C2H2 type 179 204 IPR013087 -
Bisa12g1590 419 Pfam Zinc finger, C2H2 type 69 90 IPR013087 -
Bisa12g1590 419 Pfam Zinc finger, C2H2 type 220 243 IPR013087 -
Bisa12g1590 419 ProSitePatterns Zinc finger C2H2 type domain signature. 221 243 IPR013087 -
Bisa12g1590 419 ProSitePatterns Zinc finger C2H2 type domain signature. 253 276 IPR013087 -
Bisa12g1590 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 179 209 IPR013087 -
Bisa12g1590 419 Gene3D Classic Zinc Finger 146 176 - -
Bisa12g1590 419 ProSitePatterns Zinc finger C2H2 type domain signature. 152 174 IPR013087 -
Bisa12g1590 419 Gene3D Classic Zinc Finger 304 382 - -
Bisa12g1590 419 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Bisa12g1590 419 ProSitePatterns Zinc finger C2H2 type domain signature. 181 204 IPR013087 -
Bisa12g1590 419 Gene3D Classic Zinc Finger 177 205 - -
Bisa12g1590 419 FunFam Zinc finger 45-like 66 91 - -
Bisa12g1590 419 SUPERFAMILY beta-beta-alpha zinc fingers 216 245 IPR036236 -
Bisa12g1590 419 ProSitePatterns Zinc finger C2H2 type domain signature. 342 366 IPR013087 -
Bisa12g1590 419 SUPERFAMILY beta-beta-alpha zinc fingers 291 344 IPR036236 -
Bisa12g1590 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 248 IPR013087 -
Bisa12g1590 419 SUPERFAMILY beta-beta-alpha zinc fingers 177 205 IPR036236 -
Bisa12g1590 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 309 339 IPR013087 -
Bisa12g1590 419 SUPERFAMILY beta-beta-alpha zinc fingers 22 90 IPR036236 -
Bisa12g1590 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 95 IPR013087 -
Bisa12g1590 419 SMART c2h2final6 24 47 IPR013087 -
Bisa12g1590 419 SMART c2h2final6 179 204 IPR013087 -
Bisa12g1590 419 SMART c2h2final6 340 366 IPR013087 -
Bisa12g1590 419 SMART c2h2final6 309 334 IPR013087 -
Bisa12g1590 419 SMART c2h2final6 219 243 IPR013087 -
Bisa12g1590 419 SMART c2h2final6 150 174 IPR013087 -
Bisa12g1590 419 SMART c2h2final6 68 90 IPR013087 -
Bisa12g1590 419 SMART c2h2final6 251 276 IPR013087 -
Bisa12g1590 419 SMART c2h2final6 279 300 IPR013087 -
Bisa12g1590 419 PANTHER ZINC FINGER PROTEIN 7 409 - -
Bisa12g1590 419 Gene3D Classic Zinc Finger 206 279 - -
Bisa12g1590 419 SUPERFAMILY beta-beta-alpha zinc fingers 147 176 IPR036236 -
Bisa12g1590 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 150 179 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1590 Bisa-ChrBisa12 29663428 29665697 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1590 145 369 C2H2 Transcription Factor Family AT1G72050 51.986 1.36e-93 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa12g1590 zf-C2H2 0.012 CL0361