Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1566 ATGGACGATTCCTTCTCTGACCACAAGCTTTGCGGTTTCCTACTCTCCGTTCTCAAAGTGACTCCGTCGCAAACCGACCCTTGTGCCAGTCTGGGATTCAAGGAGCGCTGCGACATCTTCGGCGACAGCTCTGGTGCTGTTGGTTTTCGGTCTGAAAACGGCGTCGTTTTAGCTCTGGCTGACTCGGTGACGAAGCAGGTTGAGACTGGAGATGCGTCTCCTTCTGATTCAGAGCAATGCAAAGTTGTGGAGAGGGATTCTGGGCTTGATTCCGATTGTAATGGAAATGTTGCGCCTCGGAGTTCGCGAAAGAAGGGCTATGTAAGAAGAAAAAATGGGGTAGTGGCAGGAAGTGGAAGCTTGAGGAAGAAGAGGATGACGAAGATTGGGATGGTAAACGGGAGTATTAGCGTGATTCACCAGCTACACTCTCTGGTTAGCCGCAAGTGCTTGAAGATTGATGGTCGAGTGATTATGGTTGAGCTTGGTGGCGCTGAGGAGGCGAGAGCTGTGGTACTGGTCGATGTTTATCTCCCAATTGCATTGTTGAGTGGCTGGCAGTTTCCAAAATCCGGGTCCACTGCTGGCGCTCTTTTTCGGCATTTAAGGTGTGATTGGGGTGAGAGAAGATCAATGCTTTCTTATTCAGACTACTGTAGGAAGACTCAAGGGGTGAGTGCAAGCATTTGGAACCTTTCTGATTGTCATGTACTTGGTTGCAAGCTCCATTACCATGTGAGTGATTCTTCAAGGAATAGTCTATTTGAACTTCATGAAATTTTTAAGAGGGTACCTGGTGTTGGAAAGCAGCAGAAGTCTGATACTTCCAGGATAATACCCTTGGATGACTCTTGGATATCTGGAATTTGGTATATATCTGATGATGTTTTAACTAAAATTCTAGCTTCCCTTGGCCCAATGGACCTTGCGAGGTTATCTGCAACTTGTCGGCATCTAAGATCCGTGGGTGCTTCAGTAATGCCTTGTACAAGATTAAAACTTTTTCCTCACCAGCAGGCAGCTGTTGAGTGGATGTTGCATCGTGAGCGAAATGGCCAATGCCGGGAACATCCTTTGTATGCTTCTTTCACAACTGAGGATGGCTTTATTTTCCATGTAAATACTGTATCTGGTGAAATAGTCATTGGGGCAGCTCCCACCATCAGAGATTTTCGGGGTGGAATGTTCTGTGATGAGCCTGGCTTGGGTAAGACTGTAACAGCTCTTTCTCTTATAATGAAGACACAAGGTACATTGGCAGATCCACTAGACGGGGCAAAGGTGGTTTGGTGTCGTCATAATGGTAATCAGAAATGCGGCTATTATGATATTACTGGTAACTACATCATTGACAGTGGTAATTTGGGGAAGAGGGATGTATGCCAGGATGCTTGGAGGAATAATGAGAACCGAAATTACTCCTCCAAAAGAGCCAGATTGATAGGTCCAGCTGAGCAAATAGCTGGACTTAATAATTCATGTTCTGGGGAAGGAAAGAAATCACCTGTAGGCGCATGCTCTGAGCAACCAATGCCTGCAAGCCGATGCTCTTGGAGCTTGAGTTGCGTAAAGAAAAATTTATGTTTCACTTATGAAGAGGAAGCTGGATTTTCCAAGGAAAGTAAAGTTAGTGAAAACTCTTCTAAACTGAAGCATGCATCAGATATTGAATCACATTTATCAGAAAATAAGCCAGTTGATTCTTCATATGGACATGAAAAGGGTTTCAGGAGGCCTGGGAAGCCTACTGCGGATTTTTTTGAGTCTAATGACACCTGGATTCAGTGTGATGCTTGTCATAAGTGGCGAAAGCTTGCAGATACCAGTATGACAAATACTAATGCAGTGTGGTTCTGTAGTATGAATACTGATCCTTTGTATCAGAGTTGTAGTGTCCCAGAACAATCTTGGCATAATAGCTGCCAAATAACTTACTTACCAGGATTTCATTTGAAAGGTAGTCCTGGGGGTGAGAAACAAAATGTTTCATTTTTCACTAGTGTACTTAAGGAGCATTACACATTGATAAATTTGGAGACAAAGAAAGCCCTGACATGGTTGGCTAGACTTTCTCCTGACAAGCTTGCTGAAATGGAAACAAATGGCATACGGGGTCCTATTTTAAGTACCTGCACTGTTTCTAGTGGATATCTTAATCCGTACCACAAAATATTTCAAGCATTTGGTCTCATTAAGAGACTAGAGAAATGTGTAAGCAGGTGGTACTACCCACAAAATCTTAACAATTTGGCTTTTGATGTGGCTGCCCTTTGCATGGCTCTTCGTGAGCCATTAGATTCAGTTAGGCTATATTTGTCTCGAGCTACCCTTATAGTTGTTCCTGCTAACTTGGTTGATCATTGGAAAACACAAATAGAAAAGCATGTGAAACCTAGTCAACTCCGAGTTTATGTTTGGACTGATCATTGGAAGCCATCTGTACATAGTCTGGCATGGAATTATGATGTTGTAATTACTACGTTTAGTCGTCTAAGCGCAGAGTGGAGTCCACGTAAGAGAAGTATTTTGATGCAAATTCATTGGTTTAGAATCATGTTAGATGAAGGGCACACTCTTGGCTCAAGCCTGACCTTAACAAACAAGTTGCAAATGGCTATTTCATTGATGGCTTCAAATCGTTGGATACTAACAGGAACACCAACACCTAACACTCCTAAAAGCCAACTATCACATCTCCAACCATTGCTAAGATTCCTTCATGAAGAAGCTTATGGACAGAACCAAAAGTCATGGGAAGCTGGCATCCTTAAGCCTTTTGAGGCAGAGATGGAGGAAGGAAGGTCTCGTCTATTGCATCTACTTCAAAACTGCATGATTAGTGCAAGGAAGATAGATTTATGTAATATCCCACCATGTATCAAGAAAGCTGTTTTTCTAGATTTTGCTGAGGAGCATGCCAGAAGTTACAATGAATTGGTACTTACAGTTCGTCGTAATATATTGATGGCTGATTGGAATGATCCTTCACATGTTGAGAGTCTACTGAATCCAAAACAATGGAAATTTAGGGGTGCAACAGTAAAAAATGTCAGACTCTCGTGCTGTGTTGCTGGACATATTAAAGTTACACATGCTGGCGAAGATATTCAGGAAACAATGGATATGTTAGTAGAAAGTGGTCTGGATCATGATTCAGGAGAGTATGCCTCCATAAGATATAATCTCCTTTATGGTGGTCAGTGTGTCAGGTGCAAAGAATGGTGCCGCCTTCCCTTTATTACACCATGCCGGCATCTACTCTGCCTTGACTGTGTTGCATTAGACAGTAGGAAGTGTACTTACCCTGGCTGCAGTAAATTATATGAGATGCAGAGTCCAGATACACTAGCCCGCCCTGAAAATCCTAACCCAAAGTGGCCTGTACCCAAAGATCTTATTGAGCTACAACCTTCATATAAACAGGATAATTGGGATCCGGATTGGCAATCAACATCTAGTAGCAAGGTCTCCTATCTTGTCCAGAGGTTGAAAGCTTTGCAAGAAGTCAATAAAGAGATGGGTTACTATATGGACAACAGCAATGATCTGATGCCTCCCAAGAGTAGTTGCCCTTTGCAGACGGGAGATGCAAAATCATCATTGCAGCACTACCCTCTAAGCACTGAGCCTAATAAGATCCCTGAGAAAGTTTTGATATTTTCTCAATTTCTTGAGCATATACACGTCATTGAACAGCAGTTGACTATTGCTGGTATTAAATATACTGGGATGTATAGTCCAATGCATTCAAGCAACAAAAAAAAGTCACTGTCCACGTTCCAGCATGATTCCAGTTGTATGGCACTTGTGATGGATGGAAGTGCTGCATTGGGTCTCGACTTGAGTTTTGTAACACACGTTTTTCTAATGGAACCAATCTGGGACAGAAGCATGGAGGAACAAGTAATTAGCCGTGCTCATCGCATGGGTGCTTGTCGTCCCATTCATGTGGAAACATTAGCAATGCGTGGCACAATTGAAGAGCAAATGCTAGAATTTTTACAGGTGAAACTTCATGACCTGAATTATACATACGTCTTCCTAAATTATAACTTTACCATAAAATTCCCAACTACAAGTGTTGTCCAATCTGAAGATGAGGGGGGACGAGGACGTTCATTGCATGATTTTGCCGAAAATATTTATCTACTGAAACTTAGATTTGTGCAGACCAATTCTAACACCTAG 4188 0.4255 MDDSFSDHKLCGFLLSVLKVTPSQTDPCASLGFKERCDIFGDSSGAVGFRSENGVVLALADSVTKQVETGDASPSDSEQCKVVERDSGLDSDCNGNVAPRSSRKKGYVRRKNGVVAGSGSLRKKRMTKIGMVNGSISVIHQLHSLVSRKCLKIDGRVIMVELGGAEEARAVVLVDVYLPIALLSGWQFPKSGSTAGALFRHLRCDWGERRSMLSYSDYCRKTQGVSASIWNLSDCHVLGCKLHYHVSDSSRNSLFELHEIFKRVPGVGKQQKSDTSRIIPLDDSWISGIWYISDDVLTKILASLGPMDLARLSATCRHLRSVGASVMPCTRLKLFPHQQAAVEWMLHRERNGQCREHPLYASFTTEDGFIFHVNTVSGEIVIGAAPTIRDFRGGMFCDEPGLGKTVTALSLIMKTQGTLADPLDGAKVVWCRHNGNQKCGYYDITGNYIIDSGNLGKRDVCQDAWRNNENRNYSSKRARLIGPAEQIAGLNNSCSGEGKKSPVGACSEQPMPASRCSWSLSCVKKNLCFTYEEEAGFSKESKVSENSSKLKHASDIESHLSENKPVDSSYGHEKGFRRPGKPTADFFESNDTWIQCDACHKWRKLADTSMTNTNAVWFCSMNTDPLYQSCSVPEQSWHNSCQITYLPGFHLKGSPGGEKQNVSFFTSVLKEHYTLINLETKKALTWLARLSPDKLAEMETNGIRGPILSTCTVSSGYLNPYHKIFQAFGLIKRLEKCVSRWYYPQNLNNLAFDVAALCMALREPLDSVRLYLSRATLIVVPANLVDHWKTQIEKHVKPSQLRVYVWTDHWKPSVHSLAWNYDVVITTFSRLSAEWSPRKRSILMQIHWFRIMLDEGHTLGSSLTLTNKLQMAISLMASNRWILTGTPTPNTPKSQLSHLQPLLRFLHEEAYGQNQKSWEAGILKPFEAEMEEGRSRLLHLLQNCMISARKIDLCNIPPCIKKAVFLDFAEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRGATVKNVRLSCCVAGHIKVTHAGEDIQETMDMLVESGLDHDSGEYASIRYNLLYGGQCVRCKEWCRLPFITPCRHLLCLDCVALDSRKCTYPGCSKLYEMQSPDTLARPENPNPKWPVPKDLIELQPSYKQDNWDPDWQSTSSSKVSYLVQRLKALQEVNKEMGYYMDNSNDLMPPKSSCPLQTGDAKSSLQHYPLSTEPNKIPEKVLIFSQFLEHIHVIEQQLTIAGIKYTGMYSPMHSSNKKKSLSTFQHDSSCMALVMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGACRPIHVETLAMRGTIEEQMLEFLQVKLHDLNYTYVFLNYNFTIKFPTTSVVQSEDEGGRGRSLHDFAENIYLLKLRFVQTNSNT 1395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1566 1395 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 774 905 IPR014001 -
Bisa12g1566 1395 CDD RING-HC 1068 1092 - -
Bisa12g1566 1395 Gene3D - 587 638 - -
Bisa12g1566 1395 ProSiteProfiles Zinc finger CW-type profile. 587 638 IPR011124 GO:0008270
Bisa12g1566 1395 ProSitePatterns Zinc finger RING-type signature. 1083 1092 IPR017907 -
Bisa12g1566 1395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 415 IPR027417 -
Bisa12g1566 1395 Gene3D - 1110 1344 IPR027417 -
Bisa12g1566 1395 Pfam Helicase conserved C-terminal domain 1211 1310 IPR001650 -
Bisa12g1566 1395 Pfam F-box domain 293 321 IPR001810 GO:0005515
Bisa12g1566 1395 Gene3D - 754 949 IPR038718 -
Bisa12g1566 1395 Pfam SNF2-related domain 337 1003 IPR000330 GO:0005524|GO:0140658
Bisa12g1566 1395 SUPERFAMILY F-box domain 287 322 IPR036047 GO:0005515
Bisa12g1566 1395 SMART ultradead3 330 916 IPR014001 -
Bisa12g1566 1395 MobiDBLite consensus disorder prediction 549 577 - -
Bisa12g1566 1395 SMART fbox_2 292 332 IPR001810 GO:0005515
Bisa12g1566 1395 SMART helicmild6 1228 1310 IPR001650 -
Bisa12g1566 1395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 847 1343 IPR027417 -
Bisa12g1566 1395 CDD DEXDc_SHPRH-like 762 946 - -
Bisa12g1566 1395 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 74 1333 - -
Bisa12g1566 1395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 773 945 IPR027417 -
Bisa12g1566 1395 Pfam CW-type Zinc Finger 592 635 IPR011124 GO:0008270
Bisa12g1566 1395 CDD F-box_SF 292 322 - -
Bisa12g1566 1395 CDD SF2_C_SNF 1215 1320 - -
Bisa12g1566 1395 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1205 1349 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1566 Bisa-ChrBisa12 28984910 28992075 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1566 333 429 RAD5 or RAD16-like Gene Family AT5G22750 29.730 3.61e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa12g1566 SNF2_N 1.1e-95 CL0023