Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1551 ATGGATACTGTTAAATGGAATTTTTTGTTTGTTTGTTTTGTCGATGGATCGTGGCATGGCTTATTAGAAAGAAATGAGCAGTATTTCTCGATTTGGGGGGTTTCCAGAATTGGAGGCTGCAAAATGTCTCTACAGCAACAGCAAACCAATCCTGATCTCAATGGTGTTTCAGGGTCAGGATATTGCCTTTATGATCTTTTGTGTGCTGATACACAAAATTTGCAACCCCAAAGAAATCAATGGAATACTTCAGACAGTGACGACCCTCAAGAAAAGCTAGAGAAGCTGATGAACCAAGATGGCAACAAGCATTGTGCTGATTGTGGATCTCCGGATCCAAAATGGGTATCTTCAAGTATTGGAGTTTTTATTTGCATCAAGTGTTCTGGCATACATAGAAGCCTAGGAGTCCACATATCAAAGGTTCTATCGCTGAAGCTAGACCAATGGACAGAAGAACAAGTTGACGTACTGGAAAGTTTTGGTGGAAACGCAGTACTAAATAAGAAGTATGAATCTTGCATCCCAAGTCATGTAAAAAAACCAAAGCCGAATTCTTCCATTGAGGAGCGTGCTGATTTTATCAGGAAAAAATATGAGCTGCTGCAGTTTTCATCGTCCGAAGAAGAACCCTTGTCCTGCCCCTTTCCACCACCACAGGGCAGTTCCTCATGCGCCAATGCTTCTCTAGACAAGAAAAATTCTACTAAACCTGCAAACAAGCATCGTATTGGGAATGCGTTTCGGAACAGCTGGGGAAGAAAAGAACCTGACCATACTAAGTCTTCAAAGAAAAGCAACTCGTTGGCTGGTATGGTTGAATTTGTTGGCTTGATAAAGGTTAATGTGGTCAAAGGCACTAACCTGGCCGTTCGGGACGTAATGACTAGTGACCCCTACGTCATCCTTTCTTTGGGTCACCAATCAGTAAAGACGCGCGTCATAAAGAACAATCTGAATCCAGTCTGGAATGAGAGCCTAATGCTGTCAATTCCCGACAACATTCCTCCTCTTAAAGTGCTTGTGTATGACAAAGATACATTCTCCACTGATGATTTTATGGGTGAAGCCGAAATAGACATCCAACCCCTACTCGCAGCTGCTAGGGCACTTGAGATATCCTCAATCGACAGTGAGTCCACACATCTTGGGAAATGGGTGGCAAGCAGGAAGAACAGCCTTCTCAAAGACGGCGACATCTTAGTCGAAGATGGCAAGATCAAACAGGGAATATCGGTGAGGCTACAAAATGTAGAGAAAGGGGAGCTTGAAGTTCAGCTTGAGTGCGTTCCTCTCACCCAATAA 1305 0.4337 MDTVKWNFLFVCFVDGSWHGLLERNEQYFSIWGVSRIGGCKMSLQQQQTNPDLNGVSGSGYCLYDLLCADTQNLQPQRNQWNTSDSDDPQEKLEKLMNQDGNKHCADCGSPDPKWVSSSIGVFICIKCSGIHRSLGVHISKVLSLKLDQWTEEQVDVLESFGGNAVLNKKYESCIPSHVKKPKPNSSIEERADFIRKKYELLQFSSSEEEPLSCPFPPPQGSSSCANASLDKKNSTKPANKHRIGNAFRNSWGRKEPDHTKSSKKSNSLAGMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPDNIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLLAAARALEISSIDSESTHLGKWVASRKNSLLKDGDILVEDGKIKQGISVRLQNVEKGELEVQLECVPLTQ 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1551 434 ProSiteProfiles C2 domain profile. 260 375 IPR000008 -
Bisa12g1551 434 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 274 369 IPR035892 -
Bisa12g1551 434 SMART arf_gap_3 90 209 IPR001164 GO:0005096
Bisa12g1551 434 SUPERFAMILY ArfGap/RecO-like zinc finger 90 204 IPR037278 -
Bisa12g1551 434 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 86 434 IPR044518 GO:0005096|GO:0005543
Bisa12g1551 434 ProSiteProfiles ARF GTPase-activating proteins domain profile. 90 212 IPR001164 GO:0005096
Bisa12g1551 434 Pfam Putative GTPase activating protein for Arf 91 206 IPR001164 GO:0005096
Bisa12g1551 434 MobiDBLite consensus disorder prediction 219 234 - -
Bisa12g1551 434 MobiDBLite consensus disorder prediction 210 266 - -
Bisa12g1551 434 CDD ArfGap 93 199 - -
Bisa12g1551 434 Gene3D C2 domain 276 434 IPR035892 -
Bisa12g1551 434 PRINTS HIV Rev interacting protein signature 142 163 IPR001164 GO:0005096
Bisa12g1551 434 PRINTS HIV Rev interacting protein signature 102 121 IPR001164 GO:0005096
Bisa12g1551 434 PRINTS HIV Rev interacting protein signature 121 138 IPR001164 GO:0005096
Bisa12g1551 434 Gene3D Arf GTPase activating protein 69 212 IPR038508 -
Bisa12g1551 434 Pfam C2 domain 278 366 IPR000008 -
Bisa12g1551 434 SMART C2_3c 278 373 IPR000008 -
Bisa12g1551 434 FunFam stromal membrane-associated protein 1 isoform X1 75 210 - -
Bisa12g1551 434 CDD C2_ArfGAP 276 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1551 Bisa-ChrBisa12 27965089 27970423 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1551 90 434 C2H2 Transcription Factor Family AT4G21160 48.406 7.38e-111 328