Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1548 ATGAAGCGCGAGAGCGTCCGTGACCCATCATCATCAGTCCCGTCGTCGTCGTCGTCATCCCCCACGCCTCTACGCGCTCTCGGGTCTGCCTGCCTTTTATTTTACAGTACCGCAGCGTCTATATACCTCCACCCACCCAATATCTTACTTCACCCTGCCGCCCGCCCTCTCTTTGGGGTTGATTTTCTCTGCAATGGGATTTTGACAATCAAACCATTGTTTCTGATCTGTAGTGAGTGCAAATTTGATTTTATGATCAATATTGGGCTGGTGGCTGCTTGTACCAACATGGCATCTGGTAGTCCATTCTTTGAAGATATACGGACTAAATCTGATGTTGATCCTCCTCCAAATGAAGAGTCGACAGATGTTAGTGAACTTGTGAATGATCCTCCACAACCTTCTGTAAAACCTAATATAACTGTATCGAGTAGTGTTCGTGAGCTCCTAGAGTGCCCTGTGTGCTTGAATGCCATGTACCCTCCAATTCACCAGTGTTCAAATGGTCACACTTTATGCTCAGGTTGTAAACCCAGGGTCCACAACCGGTGCCCTACTTGTCGGCATGAACTTGGCAATATCAGATGTCTGGCATTGGAGAAGGTGGCTGCATCTTTGGAACTTCCCTGTAAATATCAAGGTTTTGGTTGCATTGGCATATATCCATACTACAGCAAGCTAAAACATGAATCTCAGTGTGCATATAGACCATACAACTGTCCATATGCTGGTTCAGAATGCACTGTTATTGGTGATATTCCTTTTTTGGTGGCCCATCTGAAAGACGATCACAAAGTTGATATGCACAATGGTAGCACTTTTAACCATCGCTACGTCAAATCAAATCCACAAGAAGTTGAAAATGCTACATGGATGCTAACGGTTTTCAGTTGCTTCGGTCAGTACTTCTGTCTACATTTTGAAGCTTTTCAGCTGGGAATGGCTCCAGTATACATAGCTTTCTTGCGTTTTATGGGTGACGATAGTGAGGCAAAGAACTATAGCTACAGTCTTGAGGTGGGTGGAAATGGGAGAAAGATGACATGGCAGGGGGTGCCTCGGAGCATTAGGGATAGCCATCGGAAGGTTCGTGACAGTTTTGACGGTCTCATCATTCAACGGAACATGGCTCTCTTCTTTTCTGGGGGCGACCGGAAGGAGTTGAAGCTACGAGTTACAGGGAGGATTTGGAAAGAACAGTGA 1203 0.4572 MKRESVRDPSSSVPSSSSSSPTPLRALGSACLLFYSTAASIYLHPPNILLHPAARPLFGVDFLCNGILTIKPLFLICSECKFDFMINIGLVAACTNMASGSPFFEDIRTKSDVDPPPNEESTDVSELVNDPPQPSVKPNITVSSSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCAYRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDSEAKNYSYSLEVGGNGRKMTWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1548 400 CDD Sina 266 394 - -
Bisa12g1548 400 FunFam E3 ubiquitin-protein ligase SINAT3 204 260 - -
Bisa12g1548 400 MobiDBLite consensus disorder prediction 108 131 - -
Bisa12g1548 400 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 261 393 IPR008974 GO:0005515
Bisa12g1548 400 FunFam E3 ubiquitin-protein ligase SINAT5-like 110 203 - -
Bisa12g1548 400 Pfam Seven in absentia protein family 194 393 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bisa12g1548 400 ProSiteProfiles Zinc finger RING-type profile. 152 188 IPR001841 -
Bisa12g1548 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 260 IPR013083 -
Bisa12g1548 400 MobiDBLite consensus disorder prediction 8 23 - -
Bisa12g1548 400 SUPERFAMILY TRAF domain-like 205 397 - -
Bisa12g1548 400 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 203 IPR013083 -
Bisa12g1548 400 ProSiteProfiles Zinc finger SIAH-type profile. 205 265 IPR013010 GO:0008270
Bisa12g1548 400 CDD RING-HC_SIAHs 150 188 - -
Bisa12g1548 400 FunFam E3 ubiquitin-protein ligase SINAT5-like 261 393 - -
Bisa12g1548 400 MobiDBLite consensus disorder prediction 1 23 - -
Bisa12g1548 400 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 135 399 - -
Bisa12g1548 400 SUPERFAMILY RING/U-box 137 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1548 Bisa-ChrBisa12 27919210 27924075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1548 143 400 C3H Transcription Factor Family AT2G41980 79.457 2.33e-159 449