Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1491 ATGCAGAACCAGGCTCAGGTTCGGTGCTCCGAGAACGAGGGGCTCGCAATTTACTTGTTCAATAAATGGAAAGAAAGGGCAGAGCAACCCAAAGGGATTTCAGAAAACATTGAAAAGACTCTGTCTAAAGCTTACTACAATATCTGTAACTCTAAAACCCCCATTCAGACCATCAAAGACCTTTCTCAGGTCAAGGGCGTGGGAAAATGGATTTTGAGGCTCGTGCAGGGATTTTTTGGGACCGGTTCAGGAGGTTCTGAAGCTGAAGACTTGAAAAAAAACGGAAAGAGAACTAAAGGAAGCAAAAGATATATGCCCCAAAAAAATTCTGTGGCATATGCATTATTGATAACGCTTTACAGGGGAACTTCAAGTGGGAATGAATTTATGCGTAAACAGGAACTTATTGATGCTGCTGAAGCCAGTGGATTATCTCGGGTGCCAGTTGCGCCAGAAAAAGGAAGAGGAAAACCTGGACAGTTTGGAAGTTCTCCAAGGGATTGGTATAGTGGATGGAACTGCATGAAGACATTAATAACAAAGGGTTTAATCGTAAAATCAAGTTGTCCAGCAAAGTACATGCTCACTCAAGAAGGCAAGGAAGCAGCACGTGAATGTCTTAAAAGATCTGGAATGGAAGATTCCCTAGAGAACTCAGTTACAGAATTCCTTTCTGATATGGACAAGCAGAACACTTTAGATACAGACTGCAGTGATCATAACTTGGATACAGAAGTGATATCACCATTAAACCAGCAAAAGAAGCTAATGATTGTTCCTCTTGATTCCCTAGAGAGGTTCACACGCATGGGTTACTCCAAGGAACAAGTTGTTAATGCGTTCACAGCTGTTTCTAAAAGCCACCCAAATAAGGATGTCTCATCGCTGTGGCCAGCTGTTTTATGTCATCTTCGAGAGGAGCAAGTCTACAGTTTGCAGACAGAATCTCAAACCATGAGAAATAATTACTGCAGGGCAAGCACTAATTCTGTTGCAAGTGGTTCAATAGATTTCACTGGAAATGTGAGCAGACCTGTCAGTGCATCTTGTGGGAATATGCCAAACTCTGGTTCTCTTGATACCCCTCCTTTTGCCTTGAGAGCATGCTCATCATCTGACCATCCCATGAAAAAGCCAATTGTCGAAGGGTCTGAATCAAAGATGAGCATTTTAAGTGTACCACCATTGAGCAGGGGAGAGAGATTTGAAGATGCATATGAAGTGATTTTAATCCTGGATGATCGGGAGCAATTTGCCACTCGGGGATCACGATCCAGGAGAATTATTGAGAATATCTGCAACCAATTCAAAATCCAGATAGATGTTCGGCGATTGCCAATTGGAGATGGGATTTGGATTGCTCACCATAAAACTCTTGACAGTGAATACGTGCTGGATTTTATCGTTGAGAGGAAGAATGTTGATGATTTGCGTTGTTCAATCAGGGATAACCGTTACAAGGATCAGAAATTAAGACTTTTGAGGTGTGGATTGAAGAAACTGATATATCTAGTGGAAGGTGACCCAAATTCTTCTGAAGCTGCTGAGAGCATAAAAACGGCCTGTTTCACGACAGAGATTTTGGAGGGCTTTGATGTTCAGAGAACAAGTGGCTTGGCTGATACACTAAAGAAGTATGGTTATCTTACCCAAGCAATTTCTCAATATTACAAGACAATAGTTCTGGATGATCGTGTTAAAAGCTTTGGGACATGTCCTCCTTTTGATGAATTTATCAAGAGGTGCCAGGACCTTGACAAAATGACAGTCAACGATGTATTTGCCATCCAGCTTATGCAGGTACCTCAGGTTACAGAAGAGGTTGCCATGGCTGTGCTGGATTTGTATCCCACACTTCTCTCTCTTGCCAATGCATACGCCCTTCTTGATGGTGATGTTTGTGCACAAGAGGAGATGCTTACGAGGCAGAGTAATAATGTGATCAATGCTGTTGCAAGTAGAAACATTTTCCAGTTGGTTGTTGGATACATTGATAGTTTGATAGTTGATACCCATTTTGGTGAATTTCTGTGTGCTCTTGTTGCTCTCCATGGCAAGAAGAGTAGACCCTATAGCGGAATAGCTGCAATGCCAGATTATCAAGCAGACAAAATTGCAAACCCTAAGCAGGAGAAAGCTACAAAATGCGAGTCAGTGGGAAAATCCACTGAATTGCATTGTTCCCCATATCAATGGCTAATGAGAGAGCTAAGATGGGACAACGGAGGCTTGAACCCAATCTCCCTCCTCCTTGACTGTGCAAAATATGTAGCCTCTGGAAGCATAAAGAATGCAGACATAGGCTTAGAGTACATCTCCCACCTTGCCTCCCCTGATGGTGATGCAGCTCAGAGAATGGTGACTTACTTCAGTGAAGCCCTGGCTTACCGAATAGTCAAACACCTTCCAGGTGTCTCCAAAGCCCTCACTTCCTCCAAAACCTCACCACCTTCAGACCAAATCATGGTCCAAAAGTACTTCTTTGAGCTCTGTCCATTCTTAAAGCTAGCCTACTTGACCACAAACCAAGCCATAGTAGAAGCCATGGAGGGTGAGAAAGTGGTTCATATCATAGACCTTCAATGTTCTGAGCCTGCTCAGTGGATTGACCTTTTAATGAGTTTAAAGAAAAGGCAAGAAGGGCCTCCTCATTTGAAGATCACAGGGATTCATGAGAAGAAAGAGGTTTTAGACCAAATGGGGTTTCACTTAACAAGTGAGGCTGGAAAATTGGACTTCCCTTTACAGTTCTATCCAGTAGTGAGTAAGCTGGAGGATCTTGACGTGGAAAGCTTGCCTGTGAAGTCAGGGGAAGCACTGGCTATAAGTTCAGTGCTTCAGCTTCACTCCCTTCTCGCGAGTGACGACGAATTGGCTGCGAGGAACTCCCCAGCTACGCCGATGAACCTGCAAAGAGTGGTTCAGGCTCAGCAGCACATGAGCCAGAGGACTTTTGCAGAGTGGCTAGAGAAGGACATGATCAATGCTCATATTTCTAGTCCAGACTCAGCTCTATCCCCTCTTTCCCTCAGTGCTTCTCCCAAAATGGGGATTTTCTTGAATTCCCTAAGAAAACTCCAACCAAAGTTGATGGTAATCACTGAGCAAGAATCAAACTTGAATGGGTCTAGCCTGATGGAGAGGGTTGAAAGGGCATTGTACTTTTATAGTCCATTGTTTGATTGCTTGGACTCCACTGTTTCAAGGGGTTCAATGGAGAGGCAGAAGCTAGAGAGTGAGGTCTTTGGGGAGCAGATAAAGAGGATTATTGCATGTGAGGGGATAGAGAGGAAGGAGAGGTATGAGAAGCTTGAGAAGTGGATTCCAAGGATGGAGATGGCAGGGTTTAGGAGGGTGCCTTTGAGCTACTTTGGGATGTTGCAGGCAAAGAGGGTGTTGCAGAGCTATGGGCATAAGTATAAAATCAGAGAAGACAATGATTGTTTGCTTATGTGTTGGAGTGATAGGCCTCTTTTTTCTGTTTCAGCTTGGAGTTATAGGAGGTGA 3507 0.4366 MQNQAQVRCSENEGLAIYLFNKWKERAEQPKGISENIEKTLSKAYYNICNSKTPIQTIKDLSQVKGVGKWILRLVQGFFGTGSGGSEAEDLKKNGKRTKGSKRYMPQKNSVAYALLITLYRGTSSGNEFMRKQELIDAAEASGLSRVPVAPEKGRGKPGQFGSSPRDWYSGWNCMKTLITKGLIVKSSCPAKYMLTQEGKEAARECLKRSGMEDSLENSVTEFLSDMDKQNTLDTDCSDHNLDTEVISPLNQQKKLMIVPLDSLERFTRMGYSKEQVVNAFTAVSKSHPNKDVSSLWPAVLCHLREEQVYSLQTESQTMRNNYCRASTNSVASGSIDFTGNVSRPVSASCGNMPNSGSLDTPPFALRACSSSDHPMKKPIVEGSESKMSILSVPPLSRGERFEDAYEVILILDDREQFATRGSRSRRIIENICNQFKIQIDVRRLPIGDGIWIAHHKTLDSEYVLDFIVERKNVDDLRCSIRDNRYKDQKLRLLRCGLKKLIYLVEGDPNSSEAAESIKTACFTTEILEGFDVQRTSGLADTLKKYGYLTQAISQYYKTIVLDDRVKSFGTCPPFDEFIKRCQDLDKMTVNDVFAIQLMQVPQVTEEVAMAVLDLYPTLLSLANAYALLDGDVCAQEEMLTRQSNNVINAVASRNIFQLVVGYIDSLIVDTHFGEFLCALVALHGKKSRPYSGIAAMPDYQADKIANPKQEKATKCESVGKSTELHCSPYQWLMRELRWDNGGLNPISLLLDCAKYVASGSIKNADIGLEYISHLASPDGDAAQRMVTYFSEALAYRIVKHLPGVSKALTSSKTSPPSDQIMVQKYFFELCPFLKLAYLTTNQAIVEAMEGEKVVHIIDLQCSEPAQWIDLLMSLKKRQEGPPHLKITGIHEKKEVLDQMGFHLTSEAGKLDFPLQFYPVVSKLEDLDVESLPVKSGEALAISSVLQLHSLLASDDELAARNSPATPMNLQRVVQAQQHMSQRTFAEWLEKDMINAHISSPDSALSPLSLSASPKMGIFLNSLRKLQPKLMVITEQESNLNGSSLMERVERALYFYSPLFDCLDSTVSRGSMERQKLESEVFGEQIKRIIACEGIERKERYEKLEKWIPRMEMAGFRRVPLSYFGMLQAKRVLQSYGHKYKIREDNDCLLMCWSDRPLFSVSAWSYRR 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1491 1168 Gene3D - 402 552 - -
Bisa12g1491 1168 FunFam crossover junction endonuclease MUS81 isoform X1 404 552 - -
Bisa12g1491 1168 Pfam GRAS domain family 747 1164 IPR005202 -
Bisa12g1491 1168 FunFam Crossover junction endonuclease MUS81 96 217 - -
Bisa12g1491 1168 CDD WH_MUS81 104 209 IPR047417 -
Bisa12g1491 1168 Gene3D - 588 663 IPR042530 -
Bisa12g1491 1168 SMART ERCC4_2 409 509 IPR006166 GO:0003677|GO:0004518
Bisa12g1491 1168 Pfam ERCC4 domain 413 543 IPR006166 GO:0003677|GO:0004518
Bisa12g1491 1168 CDD XPF_nuclease_Mus81 406 553 IPR047416 -
Bisa12g1491 1168 Gene3D - 96 218 IPR036388 -
Bisa12g1491 1168 ProSiteProfiles GRAS family profile. 737 1165 IPR005202 -
Bisa12g1491 1168 PANTHER CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81 1 661 IPR033309 GO:0006302|GO:0006308|GO:0008821
Bisa12g1491 1168 SUPERFAMILY Restriction endonuclease-like 406 552 IPR011335 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1491 Bisa-ChrBisa12 26512487 26535872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1491 719 1168 GRAS Transcription Factor Family AT1G50420 52.826 1.74e-153 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Bisa12g1491 GRAS 3.8e-120 CL0063