LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa12g1475	ATGATATACGTGAGGTGTAAACATGCAGTTAATTCGTCGGTGTTGGTGGACAGTGCCCCTTGTGTGGAAGCTTCAAATGGGTCATCAGGTTCTTCTTCTTCATTGTATAATTTGTCTGTGAATGTTGGCAACCAATACGTAAAGCTACGGGATTTGGAGTTAGAGGACGATTGTCGAATAGAGCTGATGTATATGACATCGTGGCCTGACGCAAAGGAGGGCGCCATCAATTCCTGCAGAGATATCCACAATATGCATGTTTATGGCTTTGAGCTTTCATGGCTCAACAGCATCTGTCACAAGCCTCGACAGTTTGCCTATCTCGATTTCCGTAAGAAGCCTACGTGTAGAGGCTATTCAGAAGTCCAGTTAATCTTTCTGGTTACTGGCTTGGTGGGCTCGGTGGTAATTCTAATAGTTGTACATGCTGTTGCCAAATGTGTTTTGTGTTACCCGTTTGCCATTGTGTTCTTGATCTACAAATGGCGGCGAAGACATTTATGTATGTATGAAAGCATTGAAGATTTTCTACAGAGTGACAATAACATCATGCCGGTGAGGTATTCTTACAAAGACATCCGGAAGATGACTGAAGGGTTCAAAATTAGACTGGGAAAAGGAGGCTGTGGCTCTGTTTATAAAGGGAAACTTCGAAGTGGCCGTCTTGCCGCTGTCAAGATGTTAGATAAGGTCAAAGCTGGCGGTCAAGAATTCATAAATGAAGTTGCCACACTTGGTAGAATCCATCATGTTAACATAGTTCAATTAATTGGTTATTGCGTTGAAGGGTCAAAGCGTGCTCTTATATACGAGTTTATGCAAAATGGGTCTCTTGACAAATACATTTACTCTCAACAAAAGAATGATCTTTCCTTGGATTGTGATAAGTTGTTTGCTATTTCTCTTGGAGTAGCTCGTGGTATTGAATATCTACATAAAGGATGCAATATGCAAATATTACACTTTGATATAAAGCCGCACAATATTCTTCTCGATGAAGACTTTAATCCAAAGGTTTCTGATTTTGGACTTGCTAAACTCTATCCTACAGATAACATGATTGTATCTCTAACAGCAGCAAGAGGAACTATAGGATATATGGCTCCTGAACTCTTCTATAGAAATGTGGGTGGGATCTCATACAAAGTTGACGTATATAGCTTTGGAATGCTGCTAATGGAGACGGCTGGTAGAAGGAAAAACTTGAATGCATTGGCTGAACATTCAAGCCAACTTTACTTTCCCTTTTGGGTTTATGATCAGCTACAAGAAGGACAAGAAATTAACATTGCAAATGTCACAGTTGAGGATATGAAATTGGTGAAGAAAATGATGGTCGTGGCATTGTGGTGCATACAAACAAACCCTATGGATCGTCCTTCAATGTACAAAGTTGTGGAGATGCTTGAAGGAGAAGCGGAAGACTTAGAAATGCCACAAAAGCCTTACCTATATCCACAAGAATTACCAACAGTGGATGATAGAGATCACACAAGTTCAACTACACCATCCACGGATCAATCAAGAAGTGATTCTAAAGATTTAGTCTCACTTTTAGCCCAGGAGAATGAATGCTCTATTTAG	1584	0.4028	MIYVRCKHAVNSSVLVDSAPCVEASNGSSGSSSSLYNLSVNVGNQYVKLRDLELEDDCRIELMYMTSWPDAKEGAINSCRDIHNMHVYGFELSWLNSICHKPRQFAYLDFRKKPTCRGYSEVQLIFLVTGLVGSVVILIVVHAVAKCVLCYPFAIVFLIYKWRRRHLCMYESIEDFLQSDNNIMPVRYSYKDIRKMTEGFKIRLGKGGCGSVYKGKLRSGRLAAVKMLDKVKAGGQEFINEVATLGRIHHVNIVQLIGYCVEGSKRALIYEFMQNGSLDKYIYSQQKNDLSLDCDKLFAISLGVARGIEYLHKGCNMQILHFDIKPHNILLDEDFNPKVSDFGLAKLYPTDNMIVSLTAARGTIGYMAPELFYRNVGGISYKVDVYSFGMLLMETAGRRKNLNALAEHSSQLYFPFWVYDQLQEGQEINIANVTVEDMKLVKKMMVVALWCIQTNPMDRPSMYKVVEMLEGEAEDLEMPQKPYLYPQELPTVDDRDHTSSTTPSTDQSRSDSKDLVSLLAQENECSI	527

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa12g1475	527	ProSiteProfiles	Protein kinase domain profile.	198	484	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa12g1475	527	MobiDBLite	consensus disorder prediction	477	527	-	-
	Bisa12g1475	527	MobiDBLite	consensus disorder prediction	496	527	-	-
	Bisa12g1475	527	FunFam	PR5-like receptor kinase	273	481	-	-
	Bisa12g1475	527	Gene3D	Transferase(Phosphotransferase) domain 1	273	481	-	-
	Bisa12g1475	527	FunFam	serine/threonine-protein kinase PBS1-like	169	272	-	-
	Bisa12g1475	527	Pfam	Protein kinase domain	203	467	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa12g1475	527	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	170	497	IPR045874	GO:0004672
	Bisa12g1475	527	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	319	331	IPR008271	GO:0004672\|GO:0006468
	Bisa12g1475	527	SMART	serkin_6	198	469	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa12g1475	527	Gene3D	Phosphorylase Kinase; domain 1	167	272	-	-
	Bisa12g1475	527	SUPERFAMILY	Protein kinase-like (PK-like)	179	470	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa12g1475	Bisa-ChrBisa12	26049523	26052815	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa12g1475	125	490	Receptor kinase-like Gene Family	AT5G38260	45.722	7.26e-104	323

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Bisa12g1475		Pkinase	4.4e-45	CL0016