Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1465 ATGGACGGGTACGGAGCTACTAAGATAGTGTTCTCGAGGATCCAAAACCTCGACCCTGAGAATGCTTCCAAGATCATGGGTCTGCTTCTGATTCAGGACCACGGCGAGAAGGAGATGATTCGCTTGGCCTTCGGTCCAGAGGCTCTGGTTCACTCCGTCGTAGTCAAAGCCCGAAAAGACTTAGGCCTGCCCTCGAACTCTCCGTCTCCTACTTCCCCTTCTTCTCCCTTACCTTTCCTTGCTTCCTCCACAAACCCCATCCCCATCTCCAGACAGAATTCCACTTCTTCCAGACTCCTCAACACTACCACTTCTAGTACCCCCACCACCGCTCTCTCTGACGATTTGAATTTCATGAGCAATAGCAATTTGCTCGTCGGATCCAACATGGGATACGGAGGCTCCGACCCGATTGACGATTTCCATCTCGAAAATCAACTCTCTTTCCTCAACGACGGGTCGTCGCCGACGGCCGCAACCACGACGACGAGCCTTGCTCCCAAAGCCCCAGATTTGTTTTTTCCGGAGTTAGCCTCTAGCCCCACCGGCGCCGGCGGGTACGGGTGGGGGAACCACCGCCGGAGCTGCTCCGTGAACGACGCGTGTCTGGGGTCGGAGGAGTTGAATTCTGGGCTGGGGTGGAAGCCGTGTCTTTACTTCGCGAGAGGGTACTGCAAGAATGGGAACACTTGCAGGTTTCTTCATGGCGGGTTTGCGGATTCCGATGGTGCTGCTGCTTCAATGGTGGTGGGGTCTCCGAGCAAGATGGACATGATGGACCAGTGCCACGAGCTTCTCAGATCTAAGAGCGTTCAGCAGCAGAGGTTAGCAGCTGCTTCTCAGCTCATGGCTTCTTCCTCTTTCCCTTACTCTCCCAAGTGCATGAACCTGCTGCTACAGCAGCAACAGAATGATAGCCAGAGAGCTGCTGCTGCTCTTATGATGAACGAGGATTTGCACAAGTTTGGGCGATCCAGGCTAGAAAGAAGTGATTTTTCTCTAAATGGAGGTCCTGGAATGGTGAATCCTGCTTCTAGGCAGATTTACTTGACATTCCCAGCTGATAGCACTTTCAGAGAGGAAGATGTTTCAAACTACTTTAGCATTTATGGACCTGTTCAAGACAGACTGTGA 1134 0.5265 MDGYGATKIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALVHSVVVKARKDLGLPSNSPSPTSPSSPLPFLASSTNPIPISRQNSTSSRLLNTTTSSTPTTALSDDLNFMSNSNLLVGSNMGYGGSDPIDDFHLENQLSFLNDGSSPTAATTTTSLAPKAPDLFFPELASSPTGAGGYGWGNHRRSCSVNDACLGSEELNSGLGWKPCLYFARGYCKNGNTCRFLHGGFADSDGAAASMVVGSPSKMDMMDQCHELLRSKSVQQQRLAAASQLMASSSFPYSPKCMNLLLQQQQNDSQRAAAALMMNEDLHKFGRSRLERSDFSLNGGPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDRL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1465 377 SMART c3hfinal6 213 237 IPR000571 GO:0046872
Bisa12g1465 377 Gene3D - 205 278 - -
Bisa12g1465 377 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 216 236 IPR000571 GO:0046872
Bisa12g1465 377 MobiDBLite consensus disorder prediction 63 113 - -
Bisa12g1465 377 MobiDBLite consensus disorder prediction 76 113 - -
Bisa12g1465 377 SUPERFAMILY CCCH zinc finger 214 236 IPR036855 GO:0046872
Bisa12g1465 377 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 375 - -
Bisa12g1465 377 ProSiteProfiles Zinc finger C3H1-type profile. 211 238 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1465 Bisa-ChrBisa12 25890482 25891847 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa12g1465 zf-CCCH 1.6e-05 CL0537