Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1451 ATGGGTCGAGGGAAGATTGAAATCAAAAGGATCGAGAATGCTAATAGCAGGCAAGTCACATTCTCGAAACGGCGAACTGGGTTGCTCAAAAAAGCTCAGGAACTTGCCATTCTCTGCGATGCCGAGGTTGCTGTCATCATCTTCTCCAATACAGGGAAGCTTTTCGAGTTTTCAAGTTCTGGTATGATGCGAACACTTTCAAGATACAACAAATGCTTTGATTCTTCAGAGGCTGCTGAAGTGCAATGCAAGACAGAGAAGGAAGATTCTAAGACAGTGGAGATTCTTAAAGAGGAAATCGCAAAGCTAGAAAAAATGCAATTACAGATGTCGGGTAAGGACCTGACGGGATTGGGTTTGAAAGAATTGCAACATCTCGAGCAGCAACTTAATGAAGGGTTATTGTCTGTCAAGGAGAAGAAGGAGGAATTGCTTATGGAGCAACTGGAGCAGTCAAGAGTACAGGAACAAAGGGCTAAGTTGGAGAATGAAACTTTGCGCAGACAGATCGAGGAGCTTCGTTGCCTATTTCCGATGACCGCGCATGTGGTCCCATCTTTTTTTCCATACCACCATGTAGAAAGAAGGAATACCCTTGTAAATAATGGTGTCATATGTCCCAACTTGGCCAGTAACTGTGAGAATGAGAAAGGAGAATCAGACACGACATTGCATTTAGGGTTGTCCACCGATGTTCATCGCAAGCGAAAGGCACCTGAGAAAGATTCATTTTCCAATGAATCAGAGTCTCAAATGGCTCTACTGTGA 768 0.4375 MGRGKIEIKRIENANSRQVTFSKRRTGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMMRTLSRYNKCFDSSEAAEVQCKTEKEDSKTVEILKEEIAKLEKMQLQMSGKDLTGLGLKELQHLEQQLNEGLLSVKEKKEELLMEQLEQSRVQEQRAKLENETLRRQIEELRCLFPMTAHVVPSFFPYHHVERRNTLVNNGVICPNLASNCENEKGESDTTLHLGLSTDVHRKRKAPEKDSFSNESESQMALL 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1451 255 Coils Coil 123 176 - -
Bisa12g1451 255 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa12g1451 255 MobiDBLite consensus disorder prediction 214 255 - -
Bisa12g1451 255 Pfam K-box region 87 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa12g1451 255 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Bisa12g1451 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bisa12g1451 255 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa12g1451 255 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Bisa12g1451 255 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Bisa12g1451 255 MobiDBLite consensus disorder prediction 228 244 - -
Bisa12g1451 255 Coils Coil 86 106 - -
Bisa12g1451 255 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa12g1451 255 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Bisa12g1451 255 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa12g1451 255 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa12g1451 255 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa12g1451 255 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa12g1451 255 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1451 Bisa-ChrBisa12 25418908 25422275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1451 1 253 MADS-box Gene Family AT5G13790 52.510 9.24e-87 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa12g1451 K-box 3e-15 No_clan