Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1403 ATGGGTTCAAAAACCCCAAGTCTCTCCTTCTTCTTCTTCTTCCTCTTCCTCATGCTCTCGTTAGGCTCTTGTTTTGGCTCTTATTACATGAATGACCCACTCAGAGCTCCAAAACATGAGCACTTTGGCCTTATGTCAAGGTCCTATAGAACCACCAAATCTTCCAGGTCTCAAGCTACAGTTAGTGTTGATGACTATGGAGCCCGAGCCAATGATGGTCAAGATGATTCAGAGGCCTTCAAGAAAGCTTGGAATGAGGCTTGCTCTAATGGGGCTGTTCTTGTTGTACCTGAGAAAAAAGTCTATCACCTTAAGCCAATAACATTTTCAGGTCCATGCCACCCAAACACTGCTTTTATGGTATATGGAACAGTGAAGGCATGGCCTCACATGTCTGTGTATGAAGATGATAGAAAACACTGGATTCAGTTTGATGGCATCAGTAATTTCAGAGTTGATGGAGGTATTCGAGGCACTTTTGATGGCAACGGAAAAAAATGGTGGCAAAATTCTTGCAAAGTCGACAAAAGCCTCCCATGCAAAGAAGGGCCAACTGCTGTAACTTTCAACGAATGCAACAATTTGATAGTGCAAAATGTGAGGTTCAAGAACTCACAGCAAATGCATGTGGCCTTCCAGAAATGTTTCAATGTTAGGGCTTCAAATCTCGTAGTCAAAGCTCCAGGAAACAGTCCCAACACTGATGGGATTCATGTGACAGAGACACAGAATATTCTCATAAGCAACAGTATCATTGGGACAGGTGATGACTGCATTTCCATAGTAAGTGGCTCTAGAAATGTTAGAGCTACAGATATAACTTGTGGACCAGGACATGGAATCAGCATTGGGAGCTTAGGAGCTGATAATTCAGAAGCTGAAGTGTCCAATGTGGTAGTGAATAGAGCCACATTGATAGGAACATCAAATGGAGTGAGAATAAAGACTTGGCAGGGAGGTTCTGGGTATGCAAAGAACATCAAGTTTCTTAACATAGCAATGAGAAACGTAACCAACCCTATCATAATAGACCAAAACTATTGTGATCAAGAAGAACCATGCCAAGAACAGGGTTCAGGTGTGCAATTGAGCAATGTGGTGTACGAGAACATAAGAGGAACAAGTGCCTCGGAAGTGGCTATCAAATTTGATTGTAGCAAAACTGTTCCTTGCCAAGACATATACGTTCAGGATGTGATCTTAGAACCTGAAGGACGCGGTGGAGCCGTTGCTTCATGCGACAATGTTAGATATGTCAACAGAGGAAGACTCTTCCCTCAATGTACTCGTTGA 1293 0.4277 MGSKTPSLSFFFFFLFLMLSLGSCFGSYYMNDPLRAPKHEHFGLMSRSYRTTKSSRSQATVSVDDYGARANDGQDDSEAFKKAWNEACSNGAVLVVPEKKVYHLKPITFSGPCHPNTAFMVYGTVKAWPHMSVYEDDRKHWIQFDGISNFRVDGGIRGTFDGNGKKWWQNSCKVDKSLPCKEGPTAVTFNECNNLIVQNVRFKNSQQMHVAFQKCFNVRASNLVVKAPGNSPNTDGIHVTETQNILISNSIIGTGDDCISIVSGSRNVRATDITCGPGHGISIGSLGADNSEAEVSNVVVNRATLIGTSNGVRIKTWQGGSGYAKNIKFLNIAMRNVTNPIIIDQNYCDQEEPCQEQGSGVQLSNVVYENIRGTSASEVAIKFDCSKTVPCQDIYVQDVILEPEGRGGAVASCDNVRYVNRGRLFPQCTR 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1403 430 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Bisa12g1403 430 SMART pbh1 295 316 IPR006626 -
Bisa12g1403 430 SMART pbh1 242 263 IPR006626 -
Bisa12g1403 430 SMART pbh1 192 241 IPR006626 -
Bisa12g1403 430 SMART pbh1 324 345 IPR006626 -
Bisa12g1403 430 ProSitePatterns Polygalacturonase active site. 272 285 IPR000743 GO:0004650|GO:0005975
Bisa12g1403 430 Pfam Glycosyl hydrolases family 28 94 417 IPR000743 GO:0004650|GO:0005975
Bisa12g1403 430 PANTHER - 58 416 - -
Bisa12g1403 430 FunFam Polygalacturonase QRT2 46 429 - -
Bisa12g1403 430 SUPERFAMILY Pectin lyase-like 55 429 IPR011050 -
Bisa12g1403 430 Gene3D - 46 424 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1403 Bisa-ChrBisa12 24155089 24159407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1403 10 429 Glycoside Hydrolase AT3G07970 54.525 4.15e-158 452
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa02g2548 02 64557406 64558841 Bisa12g1403 12 24155089 24159407 CCT
Bisa12g1403 12 24155089 24159407 Bisa12g1403 12 24155089 24159407 ECH