Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1394 ATGACAATGGGGAAGGAGAAGATTCATAGTAACAACAATAGTAGTAACAAGAGCAACAACGTGGGAGGGATTGGGAAGCTAAGGAAGGGGTTGTGGTCGCCGGAGGAAGATGAGAAGCTGATAAGGTACATGCTCACCAATGGACAAGGTTGTTGGAGTGACATAGCCAGAAATGCAGGCCTTCAGAGATGTGGCAAGAGCTGTCGTCTTCGTTGGATCAACTATCTCAGGCCTGACCTCAAGAGAGGTGCTTTCTCTCTCCACGAGGAACACCTCATTATCCACTTCCACTCCATTCTTGGCAATAGATGGTCTCAGATAGCAGCACGTCTTCCGGGTCGCACAGACAATGAGATCAAGAATTTCTGGAACTCCACTTTGAAGAAACGGATGAAAAACAACAACACTACTACTCCGGATCCTACTACTAATGTTACTTCTACTTCCACTACTCCTTCACCAAACAACAGTACTACTGATGACTCTTCAGATCATCACCCTACAAATCACCATCACCATGTTCTGAATGGGATCTTTACCACCATGCCCTTCAGCCATGAACAGGACCTCATGAACATGACCATGTGCATGGACTCATCCTCCTCACTATCCTCATCCTCATCCATACAGTCCCTGCAAGCCATGGCTTTTCCTGGAGACCAGTTAATGGAGTACCCCTTCTCCATGTTGGGCAACAGTAATAATCCTTACGACATGCCTGCATCATCATCCTCATGCTTAGCCCAAGTTGATGGGTTTTATGGTGATTATGGGATGGTGTTAGCGGGTAACGATAATCATAATAAAATGGGTTTCGAAATAGAAAGGGACCTCTGTCTTCCTGCATTAGAGAATAATGGTAACCTCACTGATGTGAAAAGTCACAGTAACAGCCATTTTAATAATGGTTGCTTCAGTAACACTGATCATCATCAGATCAGCTCCAAGGTGGATTTGTTTGGATTTGGAAATCATGGACAGACAGGGGAAAACTTGAGAATGGGAGAATGGGATTTGGAGGGTTTGATGCAAGATATATCCTCTTTCCCTTTCCTTGATTTCCAGGTTAGGTTGGTGAAGTTAATAATGTTCAAAGGAGATCCTGATGATGAAGATGGAAGAGAAATGTGA 1131 0.4421 MTMGKEKIHSNNNSSNKSNNVGGIGKLRKGLWSPEEDEKLIRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSLHEEHLIIHFHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRMKNNNTTTPDPTTNVTSTSTTPSPNNSTTDDSSDHHPTNHHHHVLNGIFTTMPFSHEQDLMNMTMCMDSSSSLSSSSSIQSLQAMAFPGDQLMEYPFSMLGNSNNPYDMPASSSSCLAQVDGFYGDYGMVLAGNDNHNKMGFEIERDLCLPALENNGNLTDVKSHSNSHFNNGCFSNTDHHQISSKVDLFGFGNHGQTGENLRMGEWDLEGLMQDISSFPFLDFQVRLVKLIMFKGDPDDEDGREM 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1394 376 MobiDBLite consensus disorder prediction 126 172 - -
Bisa12g1394 376 SUPERFAMILY Homeodomain-like 27 123 IPR009057 -
Bisa12g1394 376 MobiDBLite consensus disorder prediction 126 162 - -
Bisa12g1394 376 MobiDBLite consensus disorder prediction 1 22 - -
Bisa12g1394 376 PANTHER MYB DOMAIN PROTEIN 55 25 315 - -
Bisa12g1394 376 Gene3D - 83 152 - -
Bisa12g1394 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 76 IPR017930 -
Bisa12g1394 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 131 IPR017930 -
Bisa12g1394 376 FunFam MYB transcription factor 26 82 - -
Bisa12g1394 376 Gene3D - 26 82 - -
Bisa12g1394 376 SMART sant 28 78 IPR001005 -
Bisa12g1394 376 SMART sant 81 129 IPR001005 -
Bisa12g1394 376 CDD SANT 32 76 IPR001005 -
Bisa12g1394 376 CDD SANT 84 127 IPR001005 -
Bisa12g1394 376 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Bisa12g1394 376 Pfam Myb-like DNA-binding domain 82 126 IPR001005 -
Bisa12g1394 376 Pfam Myb-like DNA-binding domain 29 76 IPR001005 -
Bisa12g1394 376 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1394 Bisa-ChrBisa12 23992584 23995589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1394 1 356 MYB Transcription Factor Family AT3G08500 45.799 6.36e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bisa12g1394 Myb_DNA-binding 4.7e-13 CL0123