Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1385 ATGACGGACCCTCACTCCAATTTCTTCGCCAAATGCTTCAACTTCATCCCCCTCCATCCCCACAACACATTCTCCATTCAGTTCCAGCCTCCTCCTCTCTCAAACACCCACAATAATAAGGAAAGTACCAAACTACCCTCCTCATCCCCAACCCTTCCTCAACAGCACAAGAGCAAAGAGGAGGAAGAAACTGTGACCGTAGCCCTACGCATAGGGCTTCCCACCGTCACCACTCAGATTTCGGATTCTATCGAAACGACAGAAAAAGAAGAAGCAGGCGGTGTTGTTTCCGCTGAGTACCCTTTGGATCGATTGAACAAGGGTCAGTACTGGATCCCCACCCCCTCTCAGATTCTCATAGGCCCTACTCAGTTCTCTTGTTCTGTTTGCTCCAAGACGTTCAACAGATACAACAATCTTCAGATGCACATGTGGGGGCATGGGTCTCAGTACAGAAAGGGTCCAGACTCTCTGCGAGGAACCCAACCCACAGCGATGCTGAGGCTTCCCTGCTTCTGCTGTGCACCGAACTGCAAGCACAACATCGACCACCCCAGAGCCAGGCCTCTGAAGGACTTCAGGACCCTGCAGACCCACTACAAGAGGAAGCACGGCGTGAAGCCCTACATGTGCCGAAAGTGCAGCAAGGCCTTCGCCGTGAAAGGAGACTGGAGGACCCACGAGAAGAACTGTGGGAAAATATGGTACTGCCTCTGTGGCTCCGACTTCAAGCACAAGAGGTCCCTCAAGGACCACGTTAGGGCTTTTGGTCACGGCCATGCTGGGGTGCTTGCTGGGCCTGGGGGTGCCGTAGGGTGCATGCAGGAGGAAGACGAAGATAACTCTGAGATTGAGCATGATGGGATGGGGGAGAACTCGATGTGA 885 0.5333 MTDPHSNFFAKCFNFIPLHPHNTFSIQFQPPPLSNTHNNKESTKLPSSSPTLPQQHKSKEEEETVTVALRIGLPTVTTQISDSIETTEKEEAGGVVSAEYPLDRLNKGQYWIPTPSQILIGPTQFSCSVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLRGTQPTAMLRLPCFCCAPNCKHNIDHPRARPLKDFRTLQTHYKRKHGVKPYMCRKCSKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHVRAFGHGHAGVLAGPGGAVGCMQEEDEDNSEIEHDGMGENSM 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1385 294 ProSiteProfiles Zinc finger C2H2 type domain profile. 125 152 IPR013087 -
Bisa12g1385 294 SUPERFAMILY beta-beta-alpha zinc fingers 193 229 IPR036236 -
Bisa12g1385 294 ProSitePatterns Zinc finger C2H2 type domain signature. 127 147 IPR013087 -
Bisa12g1385 294 SMART c2h2final6 235 258 IPR013087 -
Bisa12g1385 294 SMART c2h2final6 125 147 IPR013087 -
Bisa12g1385 294 SMART c2h2final6 209 229 IPR013087 -
Bisa12g1385 294 FunFam Zinc finger protein WIP2 178 260 - -
Bisa12g1385 294 Gene3D Classic Zinc Finger 207 256 - -
Bisa12g1385 294 MobiDBLite consensus disorder prediction 26 54 - -
Bisa12g1385 294 PANTHER ZINC FINGER PROTEIN WIP2 35 284 IPR043584 GO:0003700|GO:0010468
Bisa12g1385 294 MobiDBLite consensus disorder prediction 26 63 - -
Bisa12g1385 294 SUPERFAMILY beta-beta-alpha zinc fingers 119 147 IPR036236 -
Bisa12g1385 294 Gene3D Classic Zinc Finger 124 147 - -
Bisa12g1385 294 FunFam zinc finger protein WIP2-like 124 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1385 Bisa-ChrBisa12 23875217 23877756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1385 85 294 C2H2 Transcription Factor Family AT3G57670 71.429 5.26e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa12g1385 zf-C2H2_6 4.7e-05 CL0361