Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1384 ATGTCTAAGAGGGTTTGTAAGTTCTATGCCCGTGGAGATTGTTGGAAAGGGGAGGAATGTAATTATTCTCATGACGAAAAGGATACTCCAGTTGATATTTGCACATTTTACCAGAAAGGACACTGCTTTTATGGTAGTCGATGTAGATATAAACATGTTAAAGCTTCTCAAGCACATTCAGAGTCATCTTCAGCAAATGGTCATCAATCTCTGCCTTCAAATTCTGTTATAGCTCATACTACTAGAGGAAAGTCCAATTGGGTTCCAAAGACTACAAAGCTGTCTCTTCCCTATGCCAAACATGCAGGGAGTGTATATATGCATCAGGATTCTCCAAAGAATGGTGATGTTGGTGAGTGCAGTACTGCTACAAAGTCAGAGCGTATCTTCTGTACATTTCCTGCTGCCAAATGTCCCTTTGGAGAAAAATGTTTACGCATTCATGGAGACCAGTGTCTATACTGTAAAAAGTACTGCTTGCATCCTACTAGACAAAGGGAGAGAGAGAATCATTTAAGTTCTTGTAAGAAAAAGGAAAAATATCATCAGGCATTGAAGGGTAGTCAAGAAATAGAGTGTAATGTTTGCTTGGAGCGTGTTCTTTCAAAGCCTAATGCAGCTGATCGCAAGTTTGGGATGCTTCCTGAATGCAACCATGCTTTCTGTTTATCCTGCATCCGGAATTGGCGTAGTAGTGCCCCAACCTCCGGAATAGACATCTTTAATACTAATAATAATACAGTGAGGACCTGCCCAGTTTGCCGCAAGCTATCATATTTTGTAATTCCAAGTGCTATATGGTATTCCACAAAGGAAGAAAAGCAGGAAATTATTGACAACTACAAGGCAAAGTGCAAGTTGATTGATTGCAGGCATTTTGAATTTGGAAATGGGAATTGTCCATTTGGGGCTAGATGTTTCTACAAGCATACTGTAAAGCCTGGCTCAAAGACTTGGAGACATGGCAGGCCACCACCTCCCCGCCGCCGCAGAGAAAATAATATGGATATGTATGACATGCTAGATATGCTCAGTGAATTTGATTTAGAAAGTGGAGAATTCTATTCCATCTTGCGGGATTATGAGTTATTTCAAGATATGGATCCATTCGAGATGATGGCTGCATCAGATTTACTGGCATCCGGATCAGGGCCGACTTTTTTCGGTGATGAAGAAGGTTTTTCTGATGATGAAGAAATGGGCTCTTTTCAGATGGATGCTCTATCGGAGGTGCTGGGTGATCTTTTGAGGATTCCATGA 1260 0.4111 MSKRVCKFYARGDCWKGEECNYSHDEKDTPVDICTFYQKGHCFYGSRCRYKHVKASQAHSESSSANGHQSLPSNSVIAHTTRGKSNWVPKTTKLSLPYAKHAGSVYMHQDSPKNGDVGECSTATKSERIFCTFPAAKCPFGEKCLRIHGDQCLYCKKYCLHPTRQRERENHLSSCKKKEKYHQALKGSQEIECNVCLERVLSKPNAADRKFGMLPECNHAFCLSCIRNWRSSAPTSGIDIFNTNNNTVRTCPVCRKLSYFVIPSAIWYSTKEEKQEIIDNYKAKCKLIDCRHFEFGNGNCPFGARCFYKHTVKPGSKTWRHGRPPPPRRRRENNMDMYDMLDMLSEFDLESGEFYSILRDYELFQDMDPFEMMAASDLLASGSGPTFFGDEEGFSDDEEMGSFQMDALSEVLGDLLRIP 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1384 419 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Bisa12g1384 419 PANTHER MAKORIN-RELATED 1 335 IPR045072 GO:0000209|GO:0061630
Bisa12g1384 419 Pfam RNA-binding, Nab2-type zinc finger 289 310 - -
Bisa12g1384 419 Pfam RNA-binding, Nab2-type zinc finger 136 149 - -
Bisa12g1384 419 SMART c3hfinal6 1 26 IPR000571 GO:0046872
Bisa12g1384 419 SMART c3hfinal6 126 150 IPR000571 GO:0046872
Bisa12g1384 419 SMART c3hfinal6 28 54 IPR000571 GO:0046872
Bisa12g1384 419 SMART c3hfinal6 284 312 IPR000571 GO:0046872
Bisa12g1384 419 Pfam Zinc finger, C3HC4 type (RING finger) 193 254 IPR018957 GO:0046872
Bisa12g1384 419 CDD RING-HC_MKRN 191 255 - -
Bisa12g1384 419 ProSiteProfiles Zinc finger C3H1-type profile. 284 313 IPR000571 GO:0046872
Bisa12g1384 419 SUPERFAMILY CCCH zinc finger 28 52 IPR036855 GO:0046872
Bisa12g1384 419 SUPERFAMILY RING/U-box 184 261 - -
Bisa12g1384 419 ProSiteProfiles Zinc finger C3H1-type profile. 28 55 IPR000571 GO:0046872
Bisa12g1384 419 ProSitePatterns Zinc finger RING-type signature. 217 226 IPR017907 -
Bisa12g1384 419 ProSiteProfiles Zinc finger RING-type profile. 193 255 IPR001841 -
Bisa12g1384 419 Gene3D - 1 67 - -
Bisa12g1384 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 169 286 IPR013083 -
Bisa12g1384 419 SMART ring_2 193 254 IPR001841 -
Bisa12g1384 419 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Bisa12g1384 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 4 25 IPR000571 GO:0046872
Bisa12g1384 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 32 53 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1384 Bisa-ChrBisa12 23864858 23868217 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa12g1384 zf-C3HC4 1.1e-07 CL0229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g1384 12 23864858 23868217 Bisa12g1384 12 23864858 23868217 ECH