Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1383 ATGTTGATATGGAAAGGTTCTTCAAGAGAGTTGTTCCTAAAAACTTCTATAAGTTTCTCTGCTAATGATTATTATATTTTGGCATTTGAGACACTTCAACCAGATGGAATATGCAAGGACAATGGCTGTAATGTGGCGGAAGTGGCTTACAATGGCTTAACTGCATACCAAACAGCCATACATGAGAAATCCAAGCCAATTAACATGGAAATGCTTTCTGGGTGGCTTATTGCACCTGATGTCTTCATTTGTGGAACAAGGCTAAATGTTTCTAATTGCGACATGTTTTCTGGATTTTGGGACAACAAACGTTCTTTGTGCAAGACATTTTTCCCCTGTTGGTTTGGTCCACCTTTCTATTTCTGCTTGCATGCTATTCTAATTAATGCATTTTTGTTTCCTGTATCCTATAGGATTCTTTGCAAATTCTTTGCCCATGGAGCATGTTTGAAAGGGGAGCATTGTGAATTTTCTCATGACTGGAAGGATCCTTCAAATAACATATGCACATTTTATCAGAAAGGAGTCTGTGCCTATGGTAGTCGCTGTAGATATGATCATGTCAAAGCTTCTCGTGAACAGTCCTACATTTCATCTTCTTCAGCAAGTGCACACCCAACCTTAAATTCAGATTCTGTTACAGTTGGTAGTACTGGAGTTACATCAAATGGGATTGCTACAGCTCCTGAGTTGTCATCTTTTAGCAGCCCTTCCCTTTACCCTATTATTCCTGCATGGAATCAAGAATCAGAGTATCAAATTCTTGCATGGAATCAAGAATCTGGGTATCAAGATTTCTTAGAGGAAAATGATGCTGGTGAATCCAGAATTACTGCACCTTCTGAGCGTCCAATCTGTTCATTTGCTGCAGCTGGTAACTGTCCCCGAAAGGAAAAATGCCCTTTTATCCATGGAGATTTGTGTCCCACCTGTGGAAAACACTGCTTGCATCCTTTTCGACCTGAGGAAAGAGAGGAACATATGAAGACTTGCGAAAAAATGCAAAAGCATCTTGAGGCATTGAAACGAAGTCAAGACATTGAATGCAGTGTTTGCCTTGAGCGTGTTCTTTCAAAGCCCACAGCAGCTGAACGTAAGTTTGGGCTGCTATCTGAATGTGATCACCCCTTCTGCATATCCTGTATCAGAAATTGGCGTAGTAGTAACCCAACCTTGGGAATGGATGTCAATAGCACATTGAGGGCTTGTCCGATTTGTCGCAAATTATCTTACTTCGTCATTCCAAGTGTCATTTGGTACTCTACAACTGAAGAAAAACAAGAAATCATTGAAAGCTACAAGGAAAAGCTCAAGTCAATTGATTGCAAGCATTTTGACTTTGGGAATGGGAACTGCCCTTTTGGAACTAGCTGTTTTTACAGGCATGCGTATCGAGATGGTAGACTTGAGCAGGTAGTTCTCCGGCATCTTGGGGCTGCAGATGGCAACACTGTGATTGCTAAAGACATCAGGTTGTCGGATTTCCTTGCTAACATGCATTTAAGATGA 1509 0.4095 MLIWKGSSRELFLKTSISFSANDYYILAFETLQPDGICKDNGCNVAEVAYNGLTAYQTAIHEKSKPINMEMLSGWLIAPDVFICGTRLNVSNCDMFSGFWDNKRSLCKTFFPCWFGPPFYFCLHAILINAFLFPVSYRILCKFFAHGACLKGEHCEFSHDWKDPSNNICTFYQKGVCAYGSRCRYDHVKASREQSYISSSSASAHPTLNSDSVTVGSTGVTSNGIATAPELSSFSSPSLYPIIPAWNQESEYQILAWNQESGYQDFLEENDAGESRITAPSERPICSFAAAGNCPRKEKCPFIHGDLCPTCGKHCLHPFRPEEREEHMKTCEKMQKHLEALKRSQDIECSVCLERVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSNPTLGMDVNSTLRACPICRKLSYFVIPSVIWYSTTEEKQEIIESYKEKLKSIDCKHFDFGNGNCPFGTSCFYRHAYRDGRLEQVVLRHLGAADGNTVIAKDIRLSDFLANMHLR 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1383 502 Gene3D - 136 204 - -
Bisa12g1383 502 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 412 IPR013083 -
Bisa12g1383 502 ProSiteProfiles Zinc finger C3H1-type profile. 436 465 IPR000571 GO:0046872
Bisa12g1383 502 SUPERFAMILY RING/U-box 337 413 - -
Bisa12g1383 502 SMART c3hfinal6 165 189 IPR000571 GO:0046872
Bisa12g1383 502 SMART c3hfinal6 281 306 IPR000571 GO:0046872
Bisa12g1383 502 SMART c3hfinal6 436 464 IPR000571 GO:0046872
Bisa12g1383 502 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Bisa12g1383 502 ProSiteProfiles Zinc finger C3H1-type profile. 280 307 IPR000571 GO:0046872
Bisa12g1383 502 PANTHER MAKORIN-RELATED 139 482 IPR045072 GO:0000209|GO:0061630
Bisa12g1383 502 Pfam CCCH-type zinc finger 168 187 IPR041367 -
Bisa12g1383 502 Pfam CCCH-type zinc finger 140 160 IPR041367 -
Bisa12g1383 502 SUPERFAMILY CCCH zinc finger 165 187 IPR036855 GO:0046872
Bisa12g1383 502 ProSiteProfiles Zinc finger RING-type profile. 349 407 IPR001841 -
Bisa12g1383 502 ProSiteProfiles Zinc finger C3H1-type profile. 136 162 IPR000571 GO:0046872
Bisa12g1383 502 SMART ring_2 349 406 IPR001841 -
Bisa12g1383 502 Coils Coil 324 344 - -
Bisa12g1383 502 Pfam Zinc finger, C3HC4 type (RING finger) 349 406 IPR018957 GO:0046872
Bisa12g1383 502 ProSitePatterns Zinc finger RING-type signature. 373 382 IPR017907 -
Bisa12g1383 502 ProSiteProfiles Zinc finger C3H1-type profile. 163 190 IPR000571 GO:0046872
Bisa12g1383 502 CDD RING-HC_MKRN 347 407 - -
Bisa12g1383 502 SUPERFAMILY CCCH zinc finger 138 160 IPR036855 GO:0046872
Bisa12g1383 502 Pfam RNA-binding, Nab2-type zinc finger 441 463 - -
Bisa12g1383 502 Pfam RNA-binding, Nab2-type zinc finger 285 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1383 Bisa-ChrBisa12 23856353 23864703 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa12g1383 zf-C3HC4 4.8e-07 CL0229