Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1370 ATGGAGAGGTTCAAGCAACTTCAACAAGAGCAAGAGAAGAAGAATGCAAAATTAGAGGACTCTAAACCAATTAAAATCGTTTCAGGGTCTTTGACTCCTAATCTATCCTTTAGTAAAAAAACCTCTGCAGACTCAAAGGCTAATGATAAACAGAAAGCTTCCACAGCTGGTTCCAGTGGCAAACTTGCATTCAGTTTAAAACAAAAGTCAAAGCTAGTGTCGCCACCTGTTAAGTTAAGTGCTGATGAGGATGAAGAAGAAACCGATGGTAACAATGCTTCAATTGATGCACCTCCAAAACGGCAAAAGTTGGGGCTGGAAATTGGCATGGAGCAATCGTCAAGGCAAGCTGATGGTGCACCTTCTTCCCCAAGTGATCCTACAGTGAAGAAAGTAGCTGAGAAACTAGCAAGTTTTGTGGCTAAGAATGGAAGGCAATTTGAGGATGTTACACGTCAAAAAAATCCTGGAGACACACCTTTCAAATTTTTATTTGATGAGAAATGTGCTGACTACAAATATTATGAATATCTGCTAGCTCAAGAGGAAAAGGCCCTAGCACAGCCCAGGGAATCGCAGGCACCTCGTACAAGCACTTCATCTTCCAGACTGACAAATGTTCCTCAGCGATCATCCCAGCAGCATTCAACTTACCAAATCCCCGCATCTGCTTTATATGAAAGTTCTGAAGATCCTAGCGTTTACGTATCTTCAGGTCAAGTAGGAAGTACTTATGAAGCTGGTGGATCATCAAATGCTGATTCTTTAGCACTAATGGAGTTCTATATGAAGAAAGCAGCACAGGAAGAGAAGATGAAACAACCTAAGCAATCAAAAGATGAGATGCCCCCTCCTGCTTCTCTTCAAGGTCCTTCAAAGAAAGGTCATCACATGGGCGATTACATTCCCCTAGAAGAACTTGAGAAATTCATGGCAAACTGTAATGATGCAGCAGCACAGAAAGCTGCCAGGGAGGCTGCAGAGAGGGCTAAAATTCAGGCTGATAATGTGGGTCACAAGCTCTTGTCAAAAATGGGTTGGAAAGAAGGTGAGGGCCTGGGTAGCTCCAGGAAGGGTATTTCAGATCCAATCATGGCAGGTAATGTTAAGATGAACAACTTGGGGGTTGGTGCTAACAATCCTGGGGAGGTGACAGCTGAAGATGACATATATGAACAGTACAAAAAGCGGATGATGCTAGGTTATCGTTATAGGCCCAACCCTCTGAACAATCCTCGCAAGGCATATTACTGA 1254 0.4314 MERFKQLQQEQEKKNAKLEDSKPIKIVSGSLTPNLSFSKKTSADSKANDKQKASTAGSSGKLAFSLKQKSKLVSPPVKLSADEDEEETDGNNASIDAPPKRQKLGLEIGMEQSSRQADGAPSSPSDPTVKKVAEKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDEKCADYKYYEYLLAQEEKALAQPRESQAPRTSTSSSRLTNVPQRSSQQHSTYQIPASALYESSEDPSVYVSSGQVGSTYEAGGSSNADSLALMEFYMKKAAQEEKMKQPKQSKDEMPPPASLQGPSKKGHHMGDYIPLEELEKFMANCNDAAAQKAAREAAERAKIQADNVGHKLLSKMGWKEGEGLGSSRKGISDPIMAGNVKMNNLGVGANNPGEVTAEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1370 417 ProSiteProfiles SURP motif repeat profile. 132 175 IPR000061 GO:0003723|GO:0006396
Bisa12g1370 417 Pfam G-patch domain 335 378 IPR000467 GO:0003676
Bisa12g1370 417 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 292 417 IPR040169 -
Bisa12g1370 417 Coils Coil 1 21 - -
Bisa12g1370 417 MobiDBLite consensus disorder prediction 1 130 - -
Bisa12g1370 417 SUPERFAMILY Surp module (SWAP domain) 123 183 IPR035967 GO:0003723|GO:0006396
Bisa12g1370 417 MobiDBLite consensus disorder prediction 191 238 - -
Bisa12g1370 417 MobiDBLite consensus disorder prediction 186 238 - -
Bisa12g1370 417 MobiDBLite consensus disorder prediction 1 21 - -
Bisa12g1370 417 SMART surpneu2 130 184 IPR000061 GO:0003723|GO:0006396
Bisa12g1370 417 SMART G-patch_5 332 379 IPR000467 GO:0003676
Bisa12g1370 417 ProSiteProfiles G-patch domain profile. 334 381 IPR000467 GO:0003676
Bisa12g1370 417 Gene3D Surp module 79 187 IPR035967 GO:0003723|GO:0006396
Bisa12g1370 417 MobiDBLite consensus disorder prediction 267 298 - -
Bisa12g1370 417 MobiDBLite consensus disorder prediction 27 65 - -
Bisa12g1370 417 Pfam Surp module 132 181 IPR000061 GO:0003723|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1370 Bisa-ChrBisa12 23631256 23635329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1370 279 390 C2H2 Transcription Factor Family AT5G26610 31.356 2.26e-09 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g1370 12 23631256 23635329 Bisa12g1370 12 23631256 23635329 ECH