Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1352 ATGAAGAGAGGCAGAGACGACGAAGGTGATACAGAGAGCTTAGACACGGTGAGTTGTGTGATGTTACTACCCAGAGTTGGTGTGAACCCACCATCACCATGTAGGAGTCCTAATAACAGTGGGTTTAAGTGCAAGACTTGCAATAGGACCTTCTCTTCCTTTCAAGCCCTTGGAGGCCACAGAGCCAGCCACAAGAAGCCCAGGCTTACGCGGTCTCATTCGCCCTCGCGCCCACACAAGCCAAACAAGACGCACCCGTGCCCTATCTGTGGGCACGAGTTCCGGATCGGACAAGCCCTGGGAGGCCACATGAGAAAGCATAGATCTCACACCAGTACTCCTACCTTCCGATTGCCTTTTACGGACACCGTTGACGGTGCAGATCGTGGAATTTCAAGGAGTCGTATGAACTTCGGAGTTGAGTAG 426 0.5258 MKRGRDDEGDTESLDTVSCVMLLPRVGVNPPSPCRSPNNSGFKCKTCNRTFSSFQALGGHRASHKKPRLTRSHSPSRPHKPNKTHPCPICGHEFRIGQALGGHMRKHRSHTSTPTFRLPFTDTVDGADRGISRSRMNFGVE 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1352 141 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Bisa12g1352 141 SUPERFAMILY beta-beta-alpha zinc fingers 42 107 IPR036236 -
Bisa12g1352 141 Gene3D Classic Zinc Finger 40 107 - -
Bisa12g1352 141 PANTHER ZINC FINGER PROTEIN ZAT5 17 114 - -
Bisa12g1352 141 MobiDBLite consensus disorder prediction 61 80 - -
Bisa12g1352 141 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 115 IPR013087 -
Bisa12g1352 141 SMART c2h2final6 42 64 IPR013087 -
Bisa12g1352 141 SMART c2h2final6 85 107 IPR013087 -
Bisa12g1352 141 MobiDBLite consensus disorder prediction 56 88 - -
Bisa12g1352 141 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Bisa12g1352 141 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Bisa12g1352 141 Pfam C2H2-type zinc finger 42 67 - -
Bisa12g1352 141 Pfam C2H2-type zinc finger 85 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1352 Bisa-ChrBisa12 23418112 23423809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1352 1 121 C2H2 Transcription Factor Family AT2G37430 46.617 3.97e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa12g1352 zf-C2H2_6 1.3e-08 CL0361