Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1350 ATGGTTCAACAGGAATTCCGAAAAGGTCCATGGACAGAACAGGAGGACTTCAAATTGGTCTCCTTTGTTGGCTTGTTTGGAGACCGGAGATGGGATTTTATAGCGAAAGTATCAGGTTTGAATAGAACAGGTAAGAGCTGCAGATTACGGTGGGTTAATTACCTGCATCCTGGTCTCAAACGGGGAAAGATGACACCCCAAGAAGAGCGCCTTGTGGTGGAGCTTCACGCAAAATGGGGAAATAGATGGTCACGAATTGCTCGGAAATTACCAGGGCGCACAGACAATGAGATTAAGAATTACTGGAGGACTTACATGAGGAAGAAGGCCCAGGAGAAAAAGCGGGCAGCAACTCCATCATCAACATCTAGTTGTCATTCCTCTCTATCGTCAAATAACCATGCAGTGGATTCACATCCTTCCAAAGAGAGTGGAGAAGAAAGCTTCTATGACACAGGAGGACCTAACATGATTGACTCGACAGAAACAAACATCGGCGAAGAACGAGAAGGCGAACAGGGTTACTCTATGGATGATATATGGAAAGATATTGCTCTGTCAGAAGAGAACATACTGCAGCCAATCTATGCTGGGCATATTGAAGAGAACTGCATCTTCTCTTGTCCTAGTATGCCATCTCCTTCTTGGGAGTATTCGTCAGACTCGTTGTGGGTCATGGATGAAGAAGAAAGTAAGATGTTTCTCCCTAGGAGTGATCCATTTTTTTCCTGTTACGAACGAGGGAAAGCATTTCTAACTGGCTAA 765 0.4471 MVQQEFRKGPWTEQEDFKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVVELHAKWGNRWSRIARKLPGRTDNEIKNYWRTYMRKKAQEKKRAATPSSTSSCHSSLSSNNHAVDSHPSKESGEESFYDTGGPNMIDSTETNIGEEREGEQGYSMDDIWKDIALSEENILQPIYAGHIEENCIFSCPSMPSPSWEYSSDSLWVMDEEESKMFLPRSDPFFSCYERGKAFLTG 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1350 254 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 139 IPR044676 GO:0003700|GO:0006355|GO:0043565
Bisa12g1350 254 MobiDBLite consensus disorder prediction 112 162 - -
Bisa12g1350 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Bisa12g1350 254 Gene3D - 8 60 - -
Bisa12g1350 254 Gene3D - 63 134 - -
Bisa12g1350 254 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Bisa12g1350 254 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Bisa12g1350 254 CDD SANT 63 106 IPR001005 -
Bisa12g1350 254 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Bisa12g1350 254 FunFam MYB transcription factor 63 129 - -
Bisa12g1350 254 FunFam Myb transcription factor 8 60 - -
Bisa12g1350 254 CDD SANT 10 55 IPR001005 -
Bisa12g1350 254 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Bisa12g1350 254 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
Bisa12g1350 254 MobiDBLite consensus disorder prediction 116 138 - -
Bisa12g1350 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Bisa12g1350 254 SMART sant 7 57 IPR001005 -
Bisa12g1350 254 SMART sant 60 108 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1350 Bisa-ChrBisa12 23329064 23330072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1350 1 252 MYB Transcription Factor Family AT5G59780 58.893 2.70e-95 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bisa12g1350 Myb_DNA-binding 1.4e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa02g3808 02 91840978 91842739 Bisa12g1350 12 23329064 23330072 CCT