Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1342 ATGTCTTCTAATTCCACGACATCAGATAATGCTCTGGATTGGAATGCACGACAGTTTGCTTCCGTTGTTCTAGTCTGCTTCCTCTTCATAGTACTGAGTTATTACAGCGTACTGAAGCGTCTGTGTTGTGGTGCGAGTTCTTCTGGAAACCAGGCCCAGAGGCGCCTTCGAGGTGAGTCCAATGGCGATGACCGTTCTCAGCAGTTTCGAAGGCATGGGTTAGAATTGTGTGTGATACGGTCTCTTCCAGTGTCCAAGTTTAAGAGAAGTGAGGGAGAAGAGAAGATGAACCATACGGATTGTGCAATATGCTTGGGTGAGTTTGAGGAAGGAGAATGCCTGAAACATCTTCCTAATTGCACCCATGTATTCCATGTTTCGTGCATAGACTCGTGGTTTCTGTGTCACTCCAATTGCCCTCTCTGCAGATCTCACGTTCATGATGGAGAGTGCTCTGTATCTTCTAATTCGTTGTTGGAGAGTTTGAGAAGGGAGGAATTTCTTCCGCAACAACGGGCTGCACTTGCACATTACCATTCTATTCGCTCTGACAACCTGCAAAATCAGACGCTACGATATTCAACCTCGATTCCCGGTTGA 600 0.465 MSSNSTTSDNALDWNARQFASVVLVCFLFIVLSYYSVLKRLCCGASSSGNQAQRRLRGESNGDDRSQQFRRHGLELCVIRSLPVSKFKRSEGEEKMNHTDCAICLGEFEEGECLKHLPNCTHVFHVSCIDSWFLCHSNCPLCRSHVHDGECSVSSNSLLESLRREEFLPQQRAALAHYHSIRSDNLQNQTLRYSTSIPG 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1342 199 SUPERFAMILY RING/U-box 81 147 - -
Bisa12g1342 199 PANTHER RING-H2 FINGER PROTEIN ATL16 25 156 IPR044600 GO:0016567|GO:0016740
Bisa12g1342 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 149 IPR013083 -
Bisa12g1342 199 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Bisa12g1342 199 SMART ring_2 101 142 IPR001841 -
Bisa12g1342 199 Pfam Ring finger domain 100 143 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1342 Bisa-ChrBisa12 23144278 23144877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1342 22 146 C3H Transcription Factor Family AT1G72220 37.121 2.29e-23 94.4