Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1314 ATGAGATTCGATTCACTCTCTAACGTTGCAGCTTTAGATTTTGTCCAGCTCACTTCATCCAATGCCTCTGATTTTTTGACGTGGCCTACTCCAATGAGCAATAATGTTGTTGGACAAAGAGGTTTGGTGGATCAAAATCACATGCTTTCTGACATCAACAGACTCAATAATGGAGTAGTAAATGGAGAACAAGGCTCTGGATCATCCACTGAAGATGATGCAAGATTTAAAAAGGTTACTGAAGATGGAAAGGGTGGGGTAAGGGTGCTGATTCAAATCAACGAGGGCATGCATGTATCGCAACAACAATCTCAAGGGTCAGCAATACGATGGGATCGGTTTCTCCCATTGAGATCAATAAAAGTTCTGCTGGTGGAAGATGATGATTCAACGCGCCATGTTGTGAGCGCTCTATTAAGAAATTGTAGTTATGAAGTCATTGCTGTTTCCAATGGTCTTCAAGCATGGAAAATGTTAGAGGATCCAAGCAATCACATTGATCTTGTCCTAACAGAGGTAGCTATGCCTGTTTTATCTGGAATAAGTCTTTTGTGCAAGATCATGAGCCACAAAACTCTCAAGAATATCCCAGTAATTATGATGTCATCTCATGATTCTATGGGTATAGTCTTTAAATGTTTGTCAAAGGGTGCAATTGATTTTTTAGTGAAACCCATTCGAAGGAACGAACTTAAAAACCTCTGGCAGCACGTTTGGAGAAGATGCCACAGTTCTAGTGGTAGTGGGAGTGAAAGTGGGACACAGACCAGAAAATCTGCAAAGTCCAGGAGCAATGATGTCTCTGGAAAAAATAGTGACAGTAGCGATGAAAATGACTTTGGAAGTAAAGGTATGAGTTTTCGAGATGGAAGTGACAATGGAAGTGGGACTCAGAGTTCATGGACTAAATGTTCAGCTGAGGTCAGAAGCCCTCACCCAGTTTCACCTCATAATCAATCGGTTGATGCTCCTGATAGCACATGTGCTCAAGTGATGCAGACAAAGTCTGAAAATGCTAGTAGTACATGGGTGCATGTTACAGAGAAAGAGTGCCACAAACAGAGTGAACTGCTTGATGATGTTGCAATGGGCGAAGACTTTGGTATGGGAATATCTTTAAATATGCGACTTGAACACCAACCTAAAGATTTGTCTACCAACTCAGTGGGTAAAAGGATGAATAATCTTTCTGTAGTAGATGGTGAGCAACCTAAAAAAGGACACAGTAATGTCTGTGGAAATGGACAACTGGTGTACAACAGTGATAAAACCAGGAGACAGAAAGACCGGGTTTTGAATGTCGTTGATGCAGTAACTGGTAGCAGCAGTCCACAGGTGGAAAGCAGAGACTTGAACACTACCAATGGCTTTTCCAGCATTTCACAAACTAAAGCAAGCTGTTGCGCTAAACAACATCCGTCATTTGAACTGACTTTGAAGGGGCTAGGAGGAGTAGGAGATGCTAAAAATGTCGCAGGTGATGAGCGCAATGTTTTGAGACGTTCAGATCTGTCAGCATTCTCCAAATATAACACTGCTTCTGCTAATCAGGCTCAAACAGGAAATGTAGGAAGCTGTTCTCCACTAGATAATAGCTCAGCTGCACCAAATATGGAGGAAAAGACAATGCACAACTTTCCATCTCATTCAAATGGCACTCCTCCAAATCAGCAGTCTGATGGGAGCAGCAACATCCATGACATGGCCTCCACTAACAAATATCTTAGTACCAAAGGAGAAGCGTTTGACAAGAAGCCAGATTCTTTAACAGGAGTTGGATCTTTTAATTATTCTGCATTCCAAACTGTGCAGAACAGTAGTATTTCTTCACCTCATAAGAAAGTTTCTGTCCAGGCAGAAAAAGCGGGGATTGTAAAAGCAAAAGTGGAAGGCTCTGAACAAGGGTTCTGTGTTGAGCACAATCATTGTCGGCTTCACCATCATAATCGTACCCACAATGCTACCCCAGAACTGCAGTCAGATCATGGTGTATCGTCAAATGTGTTTGAAGGGCCGGTAGAAAGTAATGCTGCAAACTTTAGTGTAGACAGAAGTGCTTCCGGGAGTGATCACGGGAGCAATGGACAAAATGGAAGCAGCATCAACTTGACAACCAGAATGTTAACTGTAGAAAACGGTATTAAGGCCAGCGGGAGCACCGGAGCCAGTGGCATCGACAGGAAAAACAGTGGAGGTGAAGGAACTGATGAAGGACGAATTGCTCTAAGAGAGGCAGCCTTGACCAAATTTCGTCAAAAGAGAAAAGAAAGATGCTTTGAGAAAAAGGTTCGATATTACAGCAGGAAAAAACTAGCAGAACAGCGGCCTCGTATTAAGGGACAATTTGTTAGACGAATAGTGTCGGACGCCGAAGAAGAAAAAGATGCACAGAAATAA 2397 0.4243 MRFDSLSNVAALDFVQLTSSNASDFLTWPTPMSNNVVGQRGLVDQNHMLSDINRLNNGVVNGEQGSGSSTEDDARFKKVTEDGKGGVRVLIQINEGMHVSQQQSQGSAIRWDRFLPLRSIKVLLVEDDDSTRHVVSALLRNCSYEVIAVSNGLQAWKMLEDPSNHIDLVLTEVAMPVLSGISLLCKIMSHKTLKNIPVIMMSSHDSMGIVFKCLSKGAIDFLVKPIRRNELKNLWQHVWRRCHSSSGSGSESGTQTRKSAKSRSNDVSGKNSDSSDENDFGSKGMSFRDGSDNGSGTQSSWTKCSAEVRSPHPVSPHNQSVDAPDSTCAQVMQTKSENASSTWVHVTEKECHKQSELLDDVAMGEDFGMGISLNMRLEHQPKDLSTNSVGKRMNNLSVVDGEQPKKGHSNVCGNGQLVYNSDKTRRQKDRVLNVVDAVTGSSSPQVESRDLNTTNGFSSISQTKASCCAKQHPSFELTLKGLGGVGDAKNVAGDERNVLRRSDLSAFSKYNTASANQAQTGNVGSCSPLDNSSAAPNMEEKTMHNFPSHSNGTPPNQQSDGSSNIHDMASTNKYLSTKGEAFDKKPDSLTGVGSFNYSAFQTVQNSSISSPHKKVSVQAEKAGIVKAKVEGSEQGFCVEHNHCRLHHHNRTHNATPELQSDHGVSSNVFEGPVESNAANFSVDRSASGSDHGSNGQNGSSINLTTRMLTVENGIKASGSTGASGIDRKNSGGEGTDEGRIALREAALTKFRQKRKERCFEKKVRYYSRKKLAEQRPRIKGQFVRRIVSDAEEEKDAQK 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1314 798 MobiDBLite consensus disorder prediction 288 325 - -
Bisa12g1314 798 Pfam Response regulator receiver domain 122 233 IPR001789 GO:0000160
Bisa12g1314 798 CDD psREC_PRR 122 225 - -
Bisa12g1314 798 PANTHER TWO-COMPONENT RESPONSE REGULATOR 121 429 IPR045279 GO:0009736
Bisa12g1314 798 SUPERFAMILY CheY-like 119 244 IPR011006 -
Bisa12g1314 798 MobiDBLite consensus disorder prediction 682 701 - -
Bisa12g1314 798 SMART REC_2 120 235 IPR001789 GO:0000160
Bisa12g1314 798 Gene3D - 119 277 - -
Bisa12g1314 798 MobiDBLite consensus disorder prediction 243 325 - -
Bisa12g1314 798 ProSiteProfiles CCT domain profile. 743 785 IPR010402 GO:0005515
Bisa12g1314 798 FunFam Two-component response regulator-like PRR37 120 278 - -
Bisa12g1314 798 ProSiteProfiles Response regulatory domain profile. 121 239 IPR001789 GO:0000160
Bisa12g1314 798 MobiDBLite consensus disorder prediction 714 737 - -
Bisa12g1314 798 MobiDBLite consensus disorder prediction 243 269 - -
Bisa12g1314 798 MobiDBLite consensus disorder prediction 517 568 - -
Bisa12g1314 798 Pfam CCT motif 743 784 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1314 Bisa-ChrBisa12 22632563 22639814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1314 108 511 Response Regulator Gene Family AT5G60100 48.655 2.95e-90 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Bisa12g1314 Response_reg 1e-21 CL0304