Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1305 ATGTTCGATCTTAATCTGAATGCGGATTCGACTGATTCGGCTCACAACGATGGCTCCGTCGTGTTCTTTGACAAGTTTTCGAAAGCTTCCGGGAATCAAAATGCGGAATCGGGGACCTCCAATTCCTCCGTCGTCAATGCCGACGGGTCCAGCAATGGAGGAGGAGATGAAGACTCGTGCTCTACACGCGGCGGGGACGTATTCACCTTTAATTTCGATATCCTTAAGGAGGAAGGTGTGAAAGACGTCGCAACCAAGGAGCTGTTTATGGTGAGTGGAACGAAAAGATCGGACGGCGAGTCCGGGAATAGGCAGGGTCAGTCTTCGTCGGTCCTTCCATCGAGGAAGAGCTGGATGGGTCTCTCATTCGATCATCAAGGTGAGAACGGAGAGATGAAGATGGTTCAGGTTCAGCAGCAATCTCAACAGCAAGTGAAGAAAAGCCGGAGGGGTCCAAGGTCTCGGAGCTCGCAGTACAGAGGGGTCACCTTCTACAGGAGGACTGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGATACCGCTCATGCCGCTGCTAGAGCCTATGACCGAGCTGCTATTAAGTTCAGGGGAGTTGATGCTGACATCAACTTCAATCTCAATGACTACGAGGAGGATCTTAAGCAGATGAAAAACCTCACCAAGGAGGAATTCGTGCATATACTTCGTCGCCAAAGTACTGGTTTCTCAAGGGGGAGTTCAAAATACCGAGGAGTAACGTTGCACAAATGTGGTCGGTGGGAAGCTCGAATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGTGAAGTAGAAGCTGCAAGGGCTTATGATAAGGCAGCTATCAAATGCAACGGAAGGGAGGCAGTTACTAACTTTGAATCAAGATCATATGATGGAGAGATGAACCGTGATGCCATTACTGAAGGTGGTAGTCACAATCTTGATCTCAATTTGGGCATAGCAACCCCAGGGAGTGCTCCTGAAGAAAATAGGGGACATCCTCAGTTCCAGTCTTTCCCTTACAGCATCCATGCTGGAAGAAGTTCAAGGATGGAGACCAACATTGATTCAGTAATTGGTGATCCATCTTTGAAAAGGCTGGTTGTAACTGAAGAGGGTCCTCCTGTATGGAATGGCATATATCCTAGTTTCTTTCCCAGTGAGGAAAGGGCAGGGAGAATCGGCGTAGATCACTCACAAGGACTCCCTCACCGAGCTTGGCAATCACAAGGCCAGGTTACTGCTACCCCAGTACCAGCGTTCTCTAATGCAGCATCATCAGGATTCTCCATTTCAGCTACATTTCCATCGCCTACCATCTTTCCATCTGTTTCTGTAAACTCAATTCCCCACAGTATCTGTTTTGCTCCATCTGGCACAGCCGGCGGCAACACTGCTCAATGTCATTACCAGATGAAGTCCCTGCAGGCACCACCCTAG 1482 0.4858 MFDLNLNADSTDSAHNDGSVVFFDKFSKASGNQNAESGTSNSSVVNADGSSNGGGDEDSCSTRGGDVFTFNFDILKEEGVKDVATKELFMVSGTKRSDGESGNRQGQSSSVLPSRKSWMGLSFDHQGENGEMKMVQVQQQSQQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLNDYEEDLKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFESRSYDGEMNRDAITEGGSHNLDLNLGIATPGSAPEENRGHPQFQSFPYSIHAGRSSRMETNIDSVIGDPSLKRLVVTEEGPPVWNGIYPSFFPSEERAGRIGVDHSQGLPHRAWQSQGQVTATPVPAFSNAASSGFSISATFPSPTIFPSVSVNSIPHSICFAPSGTAGGNTAQCHYQMKSLQAPP 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1305 493 CDD AP2 158 213 IPR001471 GO:0003700|GO:0006355
Bisa12g1305 493 PRINTS Ethylene responsive element binding protein signature 289 309 IPR001471 GO:0003700|GO:0006355
Bisa12g1305 493 PRINTS Ethylene responsive element binding protein signature 251 262 IPR001471 GO:0003700|GO:0006355
Bisa12g1305 493 Pfam AP2 domain 158 206 IPR001471 GO:0003700|GO:0006355
Bisa12g1305 493 Pfam AP2 domain 249 299 IPR001471 GO:0003700|GO:0006355
Bisa12g1305 493 SUPERFAMILY DNA-binding domain 157 215 IPR016177 GO:0003677
Bisa12g1305 493 SMART rav1_2 158 220 IPR001471 GO:0003700|GO:0006355
Bisa12g1305 493 SMART rav1_2 250 313 IPR001471 GO:0003700|GO:0006355
Bisa12g1305 493 ProSiteProfiles AP2/ERF domain profile. 158 214 IPR001471 GO:0003700|GO:0006355
Bisa12g1305 493 MobiDBLite consensus disorder prediction 134 159 - -
Bisa12g1305 493 MobiDBLite consensus disorder prediction 32 61 - -
Bisa12g1305 493 ProSiteProfiles AP2/ERF domain profile. 250 307 IPR001471 GO:0003700|GO:0006355
Bisa12g1305 493 FunFam AP2-like ethylene-responsive transcription factor 249 309 - -
Bisa12g1305 493 CDD AP2 249 307 IPR001471 GO:0003700|GO:0006355
Bisa12g1305 493 MobiDBLite consensus disorder prediction 32 58 - -
Bisa12g1305 493 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 115 351 - -
Bisa12g1305 493 Gene3D AP2/ERF domain 157 216 IPR036955 GO:0003700|GO:0006355
Bisa12g1305 493 Gene3D AP2/ERF domain 249 309 IPR036955 GO:0003700|GO:0006355
Bisa12g1305 493 SUPERFAMILY DNA-binding domain 249 307 IPR016177 GO:0003677
Bisa12g1305 493 FunFam AP2-like ethylene-responsive transcription factor 157 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1305 Bisa-ChrBisa12 22418626 22422128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1305 143 333 AP2-EREBP Transcription Factor Family AT4G36920 83.505 1.59e-97 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Bisa12g1305 AP2 2.9e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g1305 12 22418626 22422128 Bisa02g3753 02 90897643 90901051 CCT
Bisa12g1305 12 22418626 22422128 Bisa12g1305 12 22418626 22422128 ECH