Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1288 ATGGACGCATCGAACGACTTTCAATCACTGCTTTCCGAGCAACGCCGAGAGCTCGCCGCCGCAGAAGCCATGGACTCCGACTTTGAATTCGCCTTCCGTCTTCAGTTGCAGGAGGCTCTCGCTGCCTCTCTGGCTTCGCAGCCCTCTTCTTCCGCTTCCGTGGAACCCCTAGTCTCATTCGATGACGCCGTTTCAAGACCCACTACCCTTCAGTCCGAGGAGCTTGCAAGGCTCGAGCAAGAAATCAAGGACCGCCAGCAGAGCGAGATTGAAATGCGCAAGATGAAAGAGGATCTGAGCCGCCGGATGCACGATCAGATGGTCGCGAGGGAGATTATCGGAATTCCCGAGGACGATTGGAGAGAATCGGGGGATAATTTCGAGAAGCCCTTCGACGAGGGTTGCTCGAAGCGGGACGCTGTGAGAGGCGACAGAAATGCTGTTTGTCGACTGTACTTCAAAGGGTTGGTGAGCGAGGAGAGGCTTAGGGATGAGAAGATTGTGTTGGCAGGGATTGGGATTGCGATATGTGATCCCAGAGACAATTTGATATTCGAGATGAGTAAGCCACTGGCTGGTAATGGAACGAACAAGGTTGCTGCTCAGACTAAGGCTTTAATCGAAGGTCTTAATGCTGCAATTGCTTTGGACTTGAGGCGCCTGACTTTTTACTGTGATTACTTTCCACTCTTCCAGTTTGTAACTAGAAAATGGCCAACAAAACAGGCGAAGATAGGAATGCTAATGAACCAAGTGACTCTGCTTAGAAGAAAATTTACCTACTGCAATGCAAAACTTGTGCCAAGAAATGATGTCAAGTTTGCATTTAAGCTCGCAAAAGATGCAATTAATTCCCAGATCACAGTGCCTGCAGAATCTAACTGTAAAAAGAATCTGAATGAGACCTGTGTTATATGTTTGGAGGATACTGATGTCAATAACATTTTTTCGGTTGATGGCTGTCAACACCGGTATTGCTTTACTTGCATGAAACAACATGTGGAGGTGAAGTTGCTTCATGGAATGGTGCCAAAATGCCCTCATGAAGGATGCAATTCTGAGCTTCTAGTTGACAGTTGCAGGAAATTCTTGACTGATAAACTAATTGATACAATGCAACAACGAATAAAGGAAGCTTCAATTCCTGTTGCTGAGAAAATTTATTGCCCTAATCCAAGATGCTCTGCATTAATGTCAAAAACCGAGGTTATAGAGTACTCCAAAATAATTCTAGGTGACGTAGGTGACACTGAACAAATAGGACCCAAGAAGTGCATAAAATGTCACAGCCTTTTCTGCATCAGATGCAAGGTCCCTTGGCATAGTGGTATGACATGTGCCGGCTACAAAAGGTTAAACCCTATCCCTCCTGCTGAAGATGTGAAGCTGAAGTCTTTGGCATCGAGGAGTTTATGGCGTCAGTGTGTGAAGTGCAACCATATGATTGAACTTGCCGAAGGTTGCTATCACATGACTTGCAGATGTGGTCATGAATTTTGCTATAATTGTGGTGCTGAATGGAAAAAGAAAGAAGCAACGTGTTCTTGTCCACTTTGGGACGAGGATAATATTTGGATGGAGGATCACGATTCGGAAGAGGATGAAGAAGAGGAAGAAGATGAGGATTATTATGATTCCGATGATTATGAGGATTACTTATTCTGA 1665 0.4523 MDASNDFQSLLSEQRRELAAAEAMDSDFEFAFRLQLQEALAASLASQPSSSASVEPLVSFDDAVSRPTTLQSEELARLEQEIKDRQQSEIEMRKMKEDLSRRMHDQMVAREIIGIPEDDWRESGDNFEKPFDEGCSKRDAVRGDRNAVCRLYFKGLVSEERLRDEKIVLAGIGIAICDPRDNLIFEMSKPLAGNGTNKVAAQTKALIEGLNAAIALDLRRLTFYCDYFPLFQFVTRKWPTKQAKIGMLMNQVTLLRRKFTYCNAKLVPRNDVKFAFKLAKDAINSQITVPAESNCKKNLNETCVICLEDTDVNNIFSVDGCQHRYCFTCMKQHVEVKLLHGMVPKCPHEGCNSELLVDSCRKFLTDKLIDTMQQRIKEASIPVAEKIYCPNPRCSALMSKTEVIEYSKIILGDVGDTEQIGPKKCIKCHSLFCIRCKVPWHSGMTCAGYKRLNPIPPAEDVKLKSLASRSLWRQCVKCNHMIELAEGCYHMTCRCGHEFCYNCGAEWKKKEATCSCPLWDEDNIWMEDHDSEEDEEEEEDEDYYDSDDYEDYLF 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1288 554 ProSitePatterns Zinc finger RING-type signature. 321 330 IPR017907 -
Bisa12g1288 554 FunFam RBR-type E3 ubiquitin transferase 444 553 - -
Bisa12g1288 554 SMART ring_2 475 519 IPR001841 -
Bisa12g1288 554 SMART ring_2 303 346 IPR001841 -
Bisa12g1288 554 MobiDBLite consensus disorder prediction 526 554 - -
Bisa12g1288 554 ProSiteProfiles Zinc finger RING-type profile. 475 518 IPR001841 -
Bisa12g1288 554 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 147 524 IPR031127 GO:0004842|GO:0016567
Bisa12g1288 554 CDD Rcat_RBR_unk 472 507 - -
Bisa12g1288 554 Gene3D - 444 553 - -
Bisa12g1288 554 ProSiteProfiles Zinc finger RING-type profile. 303 347 IPR001841 -
Bisa12g1288 554 FunFam RBR-type E3 ubiquitin transferase 298 383 - -
Bisa12g1288 554 Pfam Reverse transcriptase-like 168 282 IPR002156 GO:0003676|GO:0004523
Bisa12g1288 554 FunFam RBR-type E3 ubiquitin transferase 149 286 - -
Bisa12g1288 554 SUPERFAMILY RING/U-box 461 523 - -
Bisa12g1288 554 SUPERFAMILY Ribonuclease H-like 170 286 IPR012337 -
Bisa12g1288 554 ProSiteProfiles TRIAD supradomain profile. 299 520 IPR044066 -
Bisa12g1288 554 SMART ibrneu5 370 446 IPR002867 GO:0008270
Bisa12g1288 554 SMART ibrneu5 459 516 IPR002867 GO:0008270
Bisa12g1288 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 383 IPR013083 -
Bisa12g1288 554 Gene3D - 151 289 IPR036397 GO:0003676
Bisa12g1288 554 Coils Coil 78 98 - -
Bisa12g1288 554 CDD BRcat_RBR_unk 383 449 - -
Bisa12g1288 554 Pfam IBR domain, a half RING-finger domain 463 514 IPR002867 GO:0008270
Bisa12g1288 554 Pfam IBR domain, a half RING-finger domain 384 446 IPR002867 GO:0008270
Bisa12g1288 554 SUPERFAMILY RING/U-box 301 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1288 Bisa-ChrBisa12 21984287 21986809 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1288 150 505 C3H Transcription Factor Family AT2G19610 37.396 4.92e-75 242