Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1285 ATGGATAAATATGATGAATCCAAAATTGAAACTAATATTGACAGTTTCCTTCTTTTGCACTCTTCTCTTGCGGCCTTTACTAAAACAAGAGCATTCTTCTTTATCCCAAAAAAAGAAAAACAAACAAACAACAGCAACAACAACAGCATTCTTCAGAGCTTGAGACCGCCTCGCATGGCGAATCGTAACGATGAAGACGAGCTCCAAACCCTTCTTTCTGAACAAAACATAGAGTTCATGTTGGCTAAAACCCTAGCTTCCGATTCGGACTTAGCCTTCCAACTGCAAATGCAAGAAGCGGTTAAAGCTTCTGTCGCTTCCCAAACCCCCGATTCACAGCCACAAGCCGCCGTATTCACCGACGAAGACAGAATTGACAACGTTCTGGACTTGGCGGCGACGCTTTTGCTGGAAGACGTGATGAGGTTCACGCAAGAGCTGAAGGACAGCGAACAATGCCAAGCGGAGATGACGAAAATGAAGCGAGATCTGGACCGTCTGATTTTCGATCAGAGTTTTGCGAGAAGCATTTTGACCATTCCCGAGGATGAGTGGAAAGAGAATGGTGACAATATCCATATGCCTTATTATGCTGACGGAGCATCATCATCTTCGTCGTTGTCACGGAGCCCTTCTCTTGCAAGAGAGTGTTTCAAACTGTACTGCAAAGGTTTGGTGAGCGAAGAATGGGTTAAAGATATGAAGGTTAATGTCGCTGCCATTGGGGTTGCCATTTGTGATTCGAGGGATTGTCTGATTTTTGAAGTTAGAAAGCCTATTGAAGTATTGGAAACTGGTGGAGTCTTGCTGAGCACTGAATCTGCTGAACTGCAAGCTGTGGTTAAAGGCCTTGATACCGCTCTTAGCTTGGGATTACAAAGGGTCACCTATTTCTGCGATGACTATATGATTTACCAATATGTTACAGGCAGAGTGCAAGCAAGCTGCCATAGTAAGTTTGCTGGGTTACTCAATCAGGTGTCTCATCTTCAAAGAAAATTTGTATATTGTGTACCATCGCTTGTTGCACGGAAGGAAATCAAATATGCTTTTAAATCTGCGAGAGACGCAATAGTTTCTCAAATCACATGGTCGGCAGAAAATGATAAAGGCACAAGCTTTAAGGAGACCTGTACAATTTGTTTTGAAGAGATAAATATTGATAAAATGTTTCAAGTGGATCACTGCTTTCATAGATATTGTTTTTCGTGTATGAAACAACATGTGGAGGTGAAGCTGCTTAATGGGATGATAGCAAATTGCCCTCATGAAGGTTGTAAATCTGAGGTGACTGTTGATAGCTGTAGAAAATTTCTAGCGCCAGAACTTGTTGATGTTGTCAGCCAACGGATGAAGGAATTAGCTATCCCTGTTACGCAGAAAGTGTATTGCCCATTTCTTAGGTGTTCAGCTTTAATGTCAAAACATGAGGTCTTAGAGTACACGAAGACTACATATGTTGGAGCTGAACAAAGTGGAGCCAGGAAATGCTTGAAATGTCATCGATTTTTCTGTATCAATTGCAGGGTTCCCTGGCATTACAATATGACCTGCTATGACTATAAAAGTTCAAATCGTTATCTTCAGGCAGAAGATGCTAAGCTTAAGTCTCTTGTCGACCAGAATCTGTGGCGGCAGTGTGTGAAGTGCAACCACGTAGTTGAACTAGCTGAAGGTTGCTATCATATCACCTGCAGATGTGGGTATGAATTTTGCTACAAATGTGGAGCACAATGGAAGAACAAAAAACCAACGTGCACTTGTCCTGTCTGGGATGAGCGCAACATTATACGTGATCCACGTCAAAGAAGAAGACAACAATGA 1824 0.4232 MDKYDESKIETNIDSFLLLHSSLAAFTKTRAFFFIPKKEKQTNNSNNNSILQSLRPPRMANRNDEDELQTLLSEQNIEFMLAKTLASDSDLAFQLQMQEAVKASVASQTPDSQPQAAVFTDEDRIDNVLDLAATLLLEDVMRFTQELKDSEQCQAEMTKMKRDLDRLIFDQSFARSILTIPEDEWKENGDNIHMPYYADGASSSSSLSRSPSLARECFKLYCKGLVSEEWVKDMKVNVAAIGVAICDSRDCLIFEVRKPIEVLETGGVLLSTESAELQAVVKGLDTALSLGLQRVTYFCDDYMIYQYVTGRVQASCHSKFAGLLNQVSHLQRKFVYCVPSLVARKEIKYAFKSARDAIVSQITWSAENDKGTSFKETCTICFEEINIDKMFQVDHCFHRYCFSCMKQHVEVKLLNGMIANCPHEGCKSEVTVDSCRKFLAPELVDVVSQRMKELAIPVTQKVYCPFLRCSALMSKHEVLEYTKTTYVGAEQSGARKCLKCHRFFCINCRVPWHYNMTCYDYKSSNRYLQAEDAKLKSLVDQNLWRQCVKCNHVVELAEGCYHITCRCGYEFCYKCGAQWKNKKPTCTCPVWDERNIIRDPRQRRRQQ 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1285 607 CDD BRcat_RBR_unk 458 521 - -
Bisa12g1285 607 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 371 456 IPR013083 -
Bisa12g1285 607 ProSiteProfiles Zinc finger RING-type profile. 378 422 IPR001841 -
Bisa12g1285 607 SUPERFAMILY RING/U-box 533 595 - -
Bisa12g1285 607 FunFam RBR-type E3 ubiquitin transferase 218 361 - -
Bisa12g1285 607 CDD Rcat_RBR_unk 544 579 - -
Bisa12g1285 607 ProSiteProfiles TRIAD supradomain profile. 374 592 IPR044066 -
Bisa12g1285 607 SMART ibrneu5 525 588 IPR002867 GO:0008270
Bisa12g1285 607 SMART ibrneu5 445 518 IPR002867 GO:0008270
Bisa12g1285 607 FunFam RBR-type E3 ubiquitin transferase 373 458 - -
Bisa12g1285 607 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 213 589 IPR031127 GO:0004842|GO:0016567
Bisa12g1285 607 FunFam RBR-type E3 ubiquitin transferase 516 607 - -
Bisa12g1285 607 Pfam Reverse transcriptase-like 236 356 IPR002156 GO:0003676|GO:0004523
Bisa12g1285 607 Pfam IBR domain, a half RING-finger domain 460 518 IPR002867 GO:0008270
Bisa12g1285 607 Pfam IBR domain, a half RING-finger domain 531 586 IPR002867 GO:0008270
Bisa12g1285 607 Gene3D - 218 358 IPR036397 GO:0003676
Bisa12g1285 607 ProSitePatterns Zinc finger RING-type signature. 396 405 IPR017907 -
Bisa12g1285 607 SUPERFAMILY RING/U-box 376 457 - -
Bisa12g1285 607 Gene3D - 516 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1285 Bisa-ChrBisa12 21919573 21922421 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1285 206 577 C3H Transcription Factor Family AT2G19610 38.933 1.11e-83 266