Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1274 ATGGAAATTGATCTGAACCATGCAGTGAGCGAGGTTGAGAAGAATGCATTTTGTAACGGGCACTGTGATAAAGGTGCTTGTGCTTCTTGTTTCTCCTCTTCAACTTCTTCATCTTCCAATTCATCTCCACCTCATGTATCTTCTTATCTCGAACTTTGGCATGCTTGTGCTGGCCCCCTCACCTCCCTCCCCAAGAAAGGAAATGTAGTAGTCTACTTTCCCCAAGGTCACCTTGAACAACTTGCCTCTTTCACTCCTTTCTCTCCCTTGGACATACCCACCTATGATCTTCAATCTCAAATCTTTTGCAGGGTCGTCAACGTCCAGCTTCTTGCCAATAAGGAGAATGATGAGGTTTACACACAGGTCACTTTGCTTCCACAGGGAGAATTAGCAGGGATGCATTTGGAGGGCCAAGAACTTGACGAATTGGGAGCATATGAGGAGGAAAATGGAGGATCACCTACAAAATCAACCCCTCACATGTTCTGCAAAACGCTTACTGCATCTGATACCAGTACTCATGGCGGGTTCTCTGTTCCTCGCAGAGCTGCTGAAGACTGTTTTCCGCCTTTGGATTATAAGCAGCAGAGACCCTCTCAAGAACTTGTTGCAAAAGACCTGCATGGAGTAGAGTGGAAATTTCGTCACATATACAGAGGTCAGCCAAGGCGGCATCTACTCACAACTGGTTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTTTCTGGTGATGCAGTGCTCTTTCTAAGGGGTGAAAGTGGAGAACTGAGATTGGGAATCAGAAGAGCCGTTAGACCCAGAAATGGTCTTCCTGAATCAATTGTTGGTGATCAGAATTGTTATCCCAATTTCCTTTCTTCAGTGGCTAATGCTATATCCACCAAAAGCGTATTTCATGTTTTCTACAGTCCAAGAGCAAGTCATGCAGAGTTTGTTGTGCCCTACCGAAAATATATTAAAAGCATCAAGAATCCAATGACCATTGGAACAAGATTCAAAATGAAATTCGAAATGGATGAATCTCCAGAAAGAAGGTGTACAGGTGGTATAGTGACTGGAATGTGTGATTTGGATCCCTATAGATGGCCTAAATCAAAATGGAGGTGTTTGATGGTTAGATGGGATGAGGATATCACTTCTAATCATCAAGAACGAGTTTCACCATGGGAGATTGAGCCGTCTGTTTCCCTCCCTCCCTTGAGCATTCAGTCATCCCCAAGGCTAAAGAAATTGCGGACAAGTCTGCAAGCTGTCACACCCAGTCACCTCATGACCGGTGGCAGTGGATTTATGGACTTTGAGGAGTCTGTAATATCGCCCAAGGTCTTGCAAGGTCAAGAAAATACAGGTTTTGTTTCACACTATTATGGATGTGATTCAGTAACCAACCAGCCAGATTTTGAGATAAGTCCTCCAAGTCATCCGAATCTTGCATCAAATGGAGTAAGAAAAGCTACAGCTGCTGAGCTTATGAGGGTTCACTCTCCTAGTTATGCAGGCTTTGCGGAAACTAGCAAGTTTCTGAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAGATCCCTGAAAGGAAAGGCCGATTTTAACTTCAGTTCTTGGGGTAAACCCAATGCAAATTGCACAACCTTCAACCTACATCAGGCATCCAAATCCAACTTTCACTCTTTAGGACCAGAAGTCCTTCAAACTGCATATTTTCCTTATGGTGACATTCACAGAGCTGGTCAAGGTAGCATGTTGTGCTCTAAACCTGCAAATTTCCAGCGAGAGAATGTCCACACTCCTTGCACTCAGGCAGAGATCATAAATGAAGTTGGCCGGTCAGATCTCCCAAATAAGGAGAAACTGCAAGATAGTATTTCTGCTGCTGCTTCTTTAGGAGCAAGTATTAGGATTCCAAATGATGACAATTTCGATGGGAAGGTAAATGCCTGTAAACTATTCGGGTTTCCCTTGTCTGGAGAAGCTAATTCTCAGAATTTACAGAACTCCACTAAAAGGAGTTGCACAAAGGTTCACAAGCAAGGCAGCTTAGTCGGAAGAGCCATTGATCTCTCAAGATTGAGCAGCTACGATGACCTGTTGAGTGAACTAGAGCGACTATTTGGCATGGAAGGCCTTATAAAAGATTCCGCTAAAGGATGGAGGATCCTGTACACCGACAGCGAAAATGATATCATGGTTGTCGGGGATGACCCATGGCATGAGTTCTGCAATGTGGTGTCAAAGATCCATATATATACCCAAGAAGAAGTGGAGAAGATGACAATTGGGATGATCAGTGATGATACCCAGAGCTGTTTGGATCAGGCACCAGTGGTAATGGAGGCTTCAAAGTCTTCATCAGTGGGCCAGCCAGATTCTTCTCCAACAGAAGTTAGAGTCTAA 2391 0.44 MEIDLNHAVSEVEKNAFCNGHCDKGACASCFSSSTSSSSNSSPPHVSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQLASFTPFSPLDIPTYDLQSQIFCRVVNVQLLANKENDEVYTQVTLLPQGELAGMHLEGQELDELGAYEEENGGSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGESGELRLGIRRAVRPRNGLPESIVGDQNCYPNFLSSVANAISTKSVFHVFYSPRASHAEFVVPYRKYIKSIKNPMTIGTRFKMKFEMDESPERRCTGGIVTGMCDLDPYRWPKSKWRCLMVRWDEDITSNHQERVSPWEIEPSVSLPPLSIQSSPRLKKLRTSLQAVTPSHLMTGGSGFMDFEESVISPKVLQGQENTGFVSHYYGCDSVTNQPDFEISPPSHPNLASNGVRKATAAELMRVHSPSYAGFAETSKFLRVLQGQEICPLRSLKGKADFNFSSWGKPNANCTTFNLHQASKSNFHSLGPEVLQTAYFPYGDIHRAGQGSMLCSKPANFQRENVHTPCTQAEIINEVGRSDLPNKEKLQDSISAAASLGASIRIPNDDNFDGKVNACKLFGFPLSGEANSQNLQNSTKRSCTKVHKQGSLVGRAIDLSRLSSYDDLLSELERLFGMEGLIKDSAKGWRILYTDSENDIMVVGDDPWHEFCNVVSKIHIYTQEEVEKMTIGMISDDTQSCLDQAPVVMEASKSSSVGQPDSSPTEVRV 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1274 796 FunFam Auxin response factor 161 265 - -
Bisa12g1274 796 SMART B3_2 163 265 IPR003340 GO:0003677
Bisa12g1274 796 Gene3D - 664 757 - -
Bisa12g1274 796 Gene3D - 161 265 IPR015300 -
Bisa12g1274 796 FunFam Auxin response factor 663 757 - -
Bisa12g1274 796 Pfam AUX/IAA family 660 752 IPR033389 -
Bisa12g1274 796 CDD B3_DNA 161 263 IPR003340 GO:0003677
Bisa12g1274 796 ProSitePatterns 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 22 30 IPR006058 GO:0051537
Bisa12g1274 796 ProSiteProfiles B3 DNA-binding domain profile. 163 265 IPR003340 GO:0003677
Bisa12g1274 796 Pfam Auxin response factor 289 371 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bisa12g1274 796 ProSiteProfiles PB1 domain profile. 668 752 IPR000270 GO:0005515
Bisa12g1274 796 SUPERFAMILY CAD & PB1 domains 669 747 - -
Bisa12g1274 796 FunFam Auxin response factor 326 399 - -
Bisa12g1274 796 SUPERFAMILY DNA-binding pseudobarrel domain 155 274 IPR015300 -
Bisa12g1274 796 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 49 757 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bisa12g1274 796 Pfam B3 DNA binding domain 163 264 IPR003340 GO:0003677
Bisa12g1274 796 Gene3D - 327 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1274 Bisa-ChrBisa12 21740641 21747015 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1274 47 796 B3 DNA Binding Superfamily AT5G60450 61.772 0.0 869
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bisa12g1274 AUX_IAA 1.1e-07 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g1274 12 21740641 21747015 Bisa12g1274 12 21740641 21747015 ECH