Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1270 ATGATGCCTGAGGAAGCCCTTCCTCTTCCTTCCTCCATGAACCCACCAAACTCAACCTCAAACCCTAGCCCTAACCCTAATCCAAATCCAATCAAGAAAAAGAGAAGCCTCCCCGGAACACCAGATCCAGATGCAGAAGTGATAGCACTATCGCCGAAGTCCCTGATGGCGACGAACCGTTTCATATGCGAAATCTGCAACAAGGGTTTCCAGAGGGACCAGAACTTGCAGCTTCATCGGCGGGGACATAATCTGCCGTGGAAGCTCCGGCAGAGGAGCAACAAGGAGGTGAGGAAGAAGGTGTACGTGTGCCCAGAGAAGAGCTGCGTCCATCACGACCCATCAAGAGCCCTCGGCGACCTCACCGGCATCAAGAAGCACTTCAGCCGGAAGCACGGCGAGAAGAAGTGGAAGTGCGATAAGTGCTCCAAGAAGTATGCAGTTCAATCCGATTGGAAAGCACATAGCAAGATTTGTGGCACTAGAGAGTACAAATGCGACTGTGGCACAATTTTCTCCAGGAAGGACAGCTTCATAACACACAGAGCTTTCTGCGACGCATTGGCTGAAGAGAGTGGGAGAATAATAACTTCAACAGTGCCAGCAGCTTTTACCAACTATAGAAGCGATCATCATAATATTAATATGGTGAGCCTGAATCCTCAAACACCAAGAATAATCCCTCAGATATTTCCTGGACTTAATCAAGAACTAATTGGTGTCTCCGAAGTATCAATGGTCAACAGCTTCGGTCAGCTCAATAACAATCATCTTGCCGTTGGAATAAGCAGTTCGAATTGTAGCTTTCCGGATTTGGTCCAAAGAATGGACATGTTTGGGACATCAACACAGACACAGTGGGTGAGCCGATACCCAGAAGCAGAAGCGTTACCAATTACAACAAGTGCCAACAACAACATAGGCATGTCTGGAATAGTGTCACTGAAGGAAGAGCCACAAGAGAACAAAGTGGAGTTGTCGCATAGTGTGGGATCTTTGTATTCTAGTAATAATCACATTCAGAACCCACAAGGAGGATCAGAAGATGGAGGAAATGGAATGCCTCACATGTCAGCAACTGCGTTGTTACAGAAAGCAGCTCAAATGGGATCATCCGCGAGCACCAACCATGTCAACAACACAACCTTCAACTCTCTCAACAACGTCTTTGGGATGATGAACAGAAACCACGTTGAGCTTCATCAAAGCACTAACCTTGGAGGTGGGTTTATGATGAATGATGGTGGAAACTCGACGACGCCGTTTTTGAGCAGCGGCAAGAGTTTGCATTCGAACGAGGAGGAGTTGGGTATGACGAGAGACTTTCTCGGGGTTGGAGGGGATCATGACTCGATGAGCAGACCTTTCTTGCAGGCAGAGTTAGCCAAGTTGAATGCAATGGGGTCGGGGTCAGGCTTGGACCTGAGCCAGTACGGTGGGCATCGCTAG 1449 0.4824 MMPEEALPLPSSMNPPNSTSNPSPNPNPNPIKKKRSLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRKDSFITHRAFCDALAEESGRIITSTVPAAFTNYRSDHHNINMVSLNPQTPRIIPQIFPGLNQELIGVSEVSMVNSFGQLNNNHLAVGISSSNCSFPDLVQRMDMFGTSTQTQWVSRYPEAEALPITTSANNNIGMSGIVSLKEEPQENKVELSHSVGSLYSSNNHIQNPQGGSEDGGNGMPHMSATALLQKAAQMGSSASTNHVNNTTFNSLNNVFGMMNRNHVELHQSTNLGGGFMMNDGGNSTTPFLSSGKSLHSNEEELGMTRDFLGVGGDHDSMSRPFLQAELAKLNAMGSGSGLDLSQYGGHR 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1270 482 Gene3D Classic Zinc Finger 114 193 - -
Bisa12g1270 482 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Bisa12g1270 482 MobiDBLite consensus disorder prediction 15 31 - -
Bisa12g1270 482 Gene3D Classic Zinc Finger 40 113 - -
Bisa12g1270 482 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Bisa12g1270 482 Pfam Zinc-finger double-stranded RNA-binding 61 83 IPR022755 -
Bisa12g1270 482 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 454 IPR031140 -
Bisa12g1270 482 MobiDBLite consensus disorder prediction 1 44 - -
Bisa12g1270 482 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Bisa12g1270 482 FunFam protein indeterminate-domain 12-like 40 108 - -
Bisa12g1270 482 SMART c2h2final6 61 83 IPR013087 -
Bisa12g1270 482 SMART c2h2final6 137 157 IPR013087 -
Bisa12g1270 482 SMART c2h2final6 102 132 IPR013087 -
Bisa12g1270 482 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1270 Bisa-ChrBisa12 21677640 21680006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1270 32 451 IDZ Gene Family AT3G45260 50.585 5.98e-119 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa12g1270 zf-C2H2_jaz 7e-05 CL0361