Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1255 ATGACCTCTGAGGAAAAAACCGTGGTTGAGGGACGCGATGCTACTTCCTGTAAAAGAACGGTTTCTCTTCCACCTCCCAAGGTTGATGATCCAATGGGAATGACTGAGGAATCGACACCTGTCCGGCACTGGAAGCGACATAATCTTCTGCTAGAGATACCCCCAAGAACATCAGAAGAGCATTCTCAGGATTTTGTCGCAATTAAGATGCCACTGACACTAAGTCCCTCTCCCACTCCTAAGAGAGTCAATTTTCTCATGACTTCTCGCTCTGTTGATACCCCGACTCATACTTCTCCACGGCCTTCTACTTCAAGAGGCAAATCCTCCATTAGAAGTATCTTGCCTAAATTGAACTTCAGGTATAAGACATCAGATATTGAAAAGGCTTCTATTCCAGCTCCAGAAAGCTCCTCTTCGGTACCTCGTGAAAAGCTTTCGATTGCAAGATCATTGTCCCTTAATAAAATATTCACTCCTAGGATTAAGAGAACATCATCATTGCCAGTAGATGAAGTTGCTTATCCTCACTCAGAGCCTGCTCATGCTGGAAGTGTTGGCTGTTCTCCACATATAAAAGAGGCTAATGGGATGATAGCCCGCTCTCAGTCGGTGCCAGTTGATGATATACATAAAAGCATACGGAGAATGGATTCATTTTTCCGTGTTATTCCTTCCACTCCTCGTGTAAAGGAAAAAAAGGAATTGCTGATCACATCCCCAACAAAGGATACTGAAAATGATGATGATGGAGGTGAAGACATAGCTGAAGAAGAGGCTGTCTGTAGGATTTGTTTGGTTGATCTATGCGAAGGCGGTGAGACCTTCAAGATGGAGTGCAGCTGCAAAGGTGAACTTGGTCTGGCACACCAGGAATGTGCTGTTAAATGGTTTAGTATCAAAGGTAACAAGACCTGTGACGTGTGCAAGGAGGAGGTTCGGAACCTACCTGTCACTCTCTTAAGGATCCAGAGTGTTCTAACGCAGAGTACTGGGTCTCAGCAGGCTGATGCAAGTGGATACAGGGTTTGGCAGGAAGTGCCTGTGCTGGTCATAGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAAAATGGGTACTGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTACTGGGTCTGCTCTCCTCCATGACATCATCAACAATGGTGAATAGCAGGTTCATCTGGATTTATGCATCTGCCCAGTTTGTTCTGGTGGTTCTTTTCGCACATCTGTTTTACACCTTGCTTCATGTGCAACCAATTCTGTCAATCCTTCTTGCAACATTCGCTGGGTTTGGTGTGGTGATGAGTGGGAGCTCTGTTTTTGTCGAGATTTCTCGATGGAGAAGAAGATGGCTGCATCGTTCTTCTCATACCTTGACCGAACCACATTCAGACCCCACCAACACCAGTCAAACCAGTTAA 1449 0.452 MTSEEKTVVEGRDATSCKRTVSLPPPKVDDPMGMTEESTPVRHWKRHNLLLEIPPRTSEEHSQDFVAIKMPLTLSPSPTPKRVNFLMTSRSVDTPTHTSPRPSTSRGKSSIRSILPKLNFRYKTSDIEKASIPAPESSSSVPREKLSIARSLSLNKIFTPRIKRTSSLPVDEVAYPHSEPAHAGSVGCSPHIKEANGMIARSQSVPVDDIHKSIRRMDSFFRVIPSTPRVKEKKELLITSPTKDTENDDDGGEDIAEEEAVCRICLVDLCEGGETFKMECSCKGELGLAHQECAVKWFSIKGNKTCDVCKEEVRNLPVTLLRIQSVLTQSTGSQQADASGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVNSRFIWIYASAQFVLVVLFAHLFYTLLHVQPILSILLATFAGFGVVMSGSSVFVEISRWRRRWLHRSSHTLTEPHSDPTNTSQTS 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1255 482 SMART ringv_2 261 310 IPR011016 GO:0008270
Bisa12g1255 482 MobiDBLite consensus disorder prediction 88 110 - -
Bisa12g1255 482 Pfam RING-variant domain 262 309 IPR011016 GO:0008270
Bisa12g1255 482 CDD RING_CH-C4HC3_MARCH 262 310 - -
Bisa12g1255 482 SUPERFAMILY RING/U-box 258 313 - -
Bisa12g1255 482 MobiDBLite consensus disorder prediction 1 41 - -
Bisa12g1255 482 ProSiteProfiles Zinc finger RING-CH-type profile. 254 316 IPR011016 GO:0008270
Bisa12g1255 482 PANTHER OS02G0165000 PROTEIN 20 466 - -
Bisa12g1255 482 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 317 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1255 Bisa-ChrBisa12 21513279 21517514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1255 246 362 C3H Transcription Factor Family AT2G37950 33.071 1.39e-12 65.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g1255 12 21513279 21517514 Bisa02g3697 02 89924965 89928555 CCT
Bisa12g1255 12 21513279 21517514 Bisa12g1255 12 21513279 21517514 ECH