Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1238 ATGTCAGAGGATATCACTGATATGAAGGATCCTTGGCTTTCGGACAAGAATTTCAATGGCCTATCGGATGAGATATTTGATGATGTCATAAAGTTTTTTGATTTCCCGCTGGATGACGTGGAACCGAATATTGCGGAAGAAGAAGATTGGGATACTCAATTTAAACGCATTGAAGATCCATCTTTTGATGTTTTCTCAGTGTCATCTGAATTGTGTGCTAAAACTCTAAAGGACAATCCAAAACTTGCGAGGACTCTCTCCGCATCTTGTAATGAAGTTTCCCCCTCAGCTGAGCCTACAACATATACTGAAGGCTTTCTAAAGCAGAATGTCTCGCAGAACAAAAAGGATTTTCCCCATTTCCGAACCTACAGTCCAGTTTCTGTTTTTGAAAGCAGCAGTTCATCCTGTGGTGAGAATTCCAGCTTTGATCTTCCTATCATCCCGGCGAAGCGAGCTCGAGGGAGGCGCCGGCGTCTCTCAAGTTTCAGCCCTCTATTGTCACTTCCCTTCATCTCTACTGAGAAATTATTAAACACAGTCAAAAGGAAGCAGAGAAAGAAGGATGTGTCCTTTCTTTCTGGTGACATCAATATGAACAAATCCTCTTCAGAGGAGCCATCTGCCCCTAGGAAATGCACGCATTGTGAAGTGACAAAAACCCCACAATGGAGGGAGGGGCCTATGGGTCCAAAGACCCTCTGCAATGCATGTGGGGTTCGGTACAGGTCCGGCCGCCTCTTCCCCGAGTACCGTCCGGCGGCTAGTCCCACCTTTGTGGCATCTTTGCATTCCAACTCCCACAAGAAGGTCTTAGAGATGAGAAACACAGCCGTCCCGGAGGCTCTCAAGGATTGTTCTACTTTGGGTCATGGAAATACGCTGGGATGA 891 0.4635 MSEDITDMKDPWLSDKNFNGLSDEIFDDVIKFFDFPLDDVEPNIAEEEDWDTQFKRIEDPSFDVFSVSSELCAKTLKDNPKLARTLSASCNEVSPSAEPTTYTEGFLKQNVSQNKKDFPHFRTYSPVSVFESSSSSCGENSSFDLPIIPAKRARGRRRRLSSFSPLLSLPFISTEKLLNTVKRKQRKKDVSFLSGDINMNKSSSEEPSAPRKCTHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVASLHSNSHKKVLEMRNTAVPEALKDCSTLGHGNTLG 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1238 296 ProSiteProfiles GATA-type zinc finger domain profile. 207 243 IPR000679 GO:0006355|GO:0043565
Bisa12g1238 296 CDD ZnF_GATA 212 259 IPR000679 GO:0006355|GO:0043565
Bisa12g1238 296 FunFam GATA transcription factor 202 287 - -
Bisa12g1238 296 PANTHER GATA TRANSCRIPTION FACTOR 43 278 - -
Bisa12g1238 296 ProSitePatterns GATA-type zinc finger domain. 213 238 IPR000679 GO:0006355|GO:0043565
Bisa12g1238 296 Gene3D - 203 279 IPR013088 GO:0006355|GO:0008270
Bisa12g1238 296 Pfam GATA zinc finger 213 246 IPR000679 GO:0006355|GO:0043565
Bisa12g1238 296 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 209 270 - -
Bisa12g1238 296 SMART GATA_3 207 257 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1238 Bisa-ChrBisa12 21199679 21204470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1238 12 275 C2C2-Gata Transcription Factor Family AT1G08010 37.370 1.58e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bisa12g1238 GATA 8.1e-17 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g1238 12 21199679 21204470 Bisa12g1238 12 21199679 21204470 ECH