Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1226 ATGTGCACTCCCACCTCCATCTTCATCGGAATTTTAACTGCTTCTGTCATAAACTTGCGATCCGGCCACTGCTACTTCTTTTCCAAGTTTTTCGCTGCTTCCTGGCGAGAGATCGGGATTAAGGTTGAGGGTGTTGGAATGAGCAGCCCGAGGCCTGAATCGCACGTGGCACAACAGATTCGGCGTGACAAGTTGAGAATCCAGAACTTGGAAGATTTTCCTACCAACGTTGAACACTTATCATTATACGCAGGCTTAAGCTCAGATCTTCTTCAAGTTAGGAATGTTCGAAACGCAAACATGCTTTACGAACCATCTTTTTACTCACCCGAAGTGGTCAATTTCTCTACGCCCTCGAACCCATCACCTCCCGCTGACGAACCCAAGCCGCACTATGGTTCGTTCCTACACCCACCTGAGCCAGCCATGTCGTCCGGAACACGTGATCACTTGGGTTACGATTGGATGGTGAACTACGCGAGTGGTTCTGTGGTCAACGAAACCAGTAACCCCAACTCTAATTTCGCTATAACGAATCACGGTTATAACGAACTCATGATCCAACATCCGCTTTACCAGAACACGTTGCAAGATATCGTGAAGTCAGCTTCCGCACAAGGATCTGACGTGGCATCATTGATGCAGCATCAGCAATCCGGGAATACATTCTGGGTGGGAGATCATCACCAACAACAGAATCAGTTACATTTTGAAACTAACAATCTGAGTGGTGATTCCATTAATAATCCTCAGGGATTATCTCTATCGCTCTCGTCAAATTCGCAGTCCAAGCTCTTGGCGTTATCTTTTGGTGAGGCGTGTGGATCTACGAAACCTGTGATGAAACCGTCTTCCTTAGTGGTAGCTTCGACCGCTGGTGGTTATCGTAATGTGGGTCCACTTGGGCCTTTCACTGGGTATGCTACTATTTTGAAGAGCTCGAGATACTTGAAGCCGGCCCAAGAGTTATTGGATGAGTTCTGTGGTGTGTGTGGTGGTAGAGACGTTGTTAAAGTTAGTGATATTTCTGAAGGCGTTAATGCAAGTGAGAGTGGGCTTAGTACAAGAGATACTGTTGTTAGTAATGCAGGTGGTGCTTCGTCTTCTGGCTTACATGGTTCCGAGGAGAATAGTGGTGATGGTGGAGCGAGAGGGGGCTTCGGGTACTCTTCCGGGCCGGAGTATCAGCAAAAGAAGGCGAAGCTGCTGTACATGCAAGAGGAGGTTACCAGAAAATACAAGCAATACCATCAACAAATGCAAATGGTTGTTTCATCATTTGAATCGGTGGCGGGTCTGAGTTCTGCTACCCCTTATGTTGCCACGGCTCTAAAGTCTGTAGCAAGACACTTCAAGTGCCTAAAAAGTGTCATCTTGGATCAGATCAAGCATACAAGAGAAGTGCTAGGTGAGGATTTGTCAGGGTCCTCCTCTGGTACAGGTAGCAAACTCGACATCGATATGGCAAGGCTAAGGTATGCAGATCAAAGCTTTCAAAAGAACAAAACTGGCTTTCTTGAACCTCAACAACAAGCGTGGAGGCCCCAAAGAGGCTTGCCGGAACGTGCAGTGGCAATTCTCAAAGCTTGGTTATTTGAGCATTTCCTCCACCCGTACCCCACGGACACCGATAAACACATGTTGGCTTCTCAAACGGGTCTATCCCGAAACCAGGTGTCAAACTGGTTCATAAATGCTCGAGTCCGAGTGTGGAAACCGATGGTTGAGGAAATACACAATCTTGAAACAAAAAGCTCAACGGGTGGGAATCAGAACGAGGGAACCTCTGGCACAGAAGGTACCCGTCAACAAGCTATGGTAGATCTTGAGCCTCTAAACAAGTTTGGTAGTAGTAAGCATGGAGATGGAGATGGAGATGGAATCCCTGAGAAGCAATTTCAGTGTTTGGAAATGAGTTCCTCAGGTGGTGGCCATTCAGAGGGAGAGGGGTTTATTAGTGCAGAACAATGGAATCAACAAGAGAAGCGATCAAAATTGGAGTGTCATCAGATACCATCAAACTTGGATGGGACATTAATGGGTTTTGTACCCTACAGGCGTGGTGATGGTGGTGGTGGGGGGGCTAGTGGGCTTGATGTCGCGGGACTCGGGCCTGTGTCGTTGACGTTGGGTCTTAGACATGGCGTCGAAGGTGTACAGCATCAGCAGCAACATTTGCAGCAGGAGCAGCAGCTTAGGCGACACTTCGGAGAGCACATGATCCATGACTTAGTGGGCTGA 2241 0.4779 MCTPTSIFIGILTASVINLRSGHCYFFSKFFAASWREIGIKVEGVGMSSPRPESHVAQQIRRDKLRIQNLEDFPTNVEHLSLYAGLSSDLLQVRNVRNANMLYEPSFYSPEVVNFSTPSNPSPPADEPKPHYGSFLHPPEPAMSSGTRDHLGYDWMVNYASGSVVNETSNPNSNFAITNHGYNELMIQHPLYQNTLQDIVKSASAQGSDVASLMQHQQSGNTFWVGDHHQQQNQLHFETNNLSGDSINNPQGLSLSLSSNSQSKLLALSFGEACGSTKPVMKPSSLVVASTAGGYRNVGPLGPFTGYATILKSSRYLKPAQELLDEFCGVCGGRDVVKVSDISEGVNASESGLSTRDTVVSNAGGASSSGLHGSEENSGDGGARGGFGYSSGPEYQQKKAKLLYMQEEVTRKYKQYHQQMQMVVSSFESVAGLSSATPYVATALKSVARHFKCLKSVILDQIKHTREVLGEDLSGSSSGTGSKLDIDMARLRYADQSFQKNKTGFLEPQQQAWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHMLASQTGLSRNQVSNWFINARVRVWKPMVEEIHNLETKSSTGGNQNEGTSGTEGTRQQAMVDLEPLNKFGSSKHGDGDGDGIPEKQFQCLEMSSSGGGHSEGEGFISAEQWNQQEKRSKLECHQIPSNLDGTLMGFVPYRRGDGGGGGASGLDVAGLGPVSLTLGLRHGVEGVQHQQQHLQQEQQLRRHFGEHMIHDLVG 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1226 746 SMART HOX_1 513 577 IPR001356 GO:0003677
Bisa12g1226 746 MobiDBLite consensus disorder prediction 347 375 - -
Bisa12g1226 746 MobiDBLite consensus disorder prediction 347 390 - -
Bisa12g1226 746 Gene3D - 516 578 - -
Bisa12g1226 746 Pfam Associated with HOX 310 458 IPR006563 -
Bisa12g1226 746 SUPERFAMILY Homeodomain-like 514 580 IPR009057 -
Bisa12g1226 746 CDD homeodomain 513 574 IPR001356 GO:0003677
Bisa12g1226 746 Pfam Homeobox KN domain 530 569 IPR008422 GO:0003677|GO:0006355
Bisa12g1226 746 MobiDBLite consensus disorder prediction 582 601 - -
Bisa12g1226 746 SMART prehox3 305 460 IPR006563 -
Bisa12g1226 746 ProSiteProfiles 'Homeobox' domain profile. 510 573 IPR001356 GO:0003677
Bisa12g1226 746 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 220 591 - -
Bisa12g1226 746 FunFam BEL1-like homeodomain protein 9 516 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1226 Bisa-ChrBisa12 21010067 21015918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1226 243 583 Homeobox Transcription Factor Family AT5G02030 43.417 2.46e-75 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Bisa12g1226 POX 3.1e-40 No_clan