Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1199 ATGGGAAGAGCTCCTTGTTGTGATAAGGCCAACGTGAAGAAGGGACCATGGTCTCCAGAAGAAGACTCGAGGCTCAAAGAGTACATAGAGAAGCATGGCACTGGAGGCAATTGGATTGCTCTTCCTCACAAAGCTGGGCTAAAGAGGTGTGGGAAAAGTTGCAGACTGAGATGGCTTAACTATCTGAGACCCAACATTAAGCATGGAGAATTCTCTGATGAGGAAGACAGAATCATTTGCACCCTCTATGCTAATATTGGAAGCAGGTGGTCAGTTATAGCTGCTCAGCTTCCAGGAAGGACTGACAATGATATCAAGAACTACTGGAACACAAAACTCAAGAAAAAGCTCATGGGTTTGCTTCCTCTTCCCCCTAATTCTCATCATCAGATCAGAAATTCTCCATTTCATCAGTCAGTGTCATCTTCAGGGTACACAGATTGCGCCTCTGTGTTATCTTCCACAGGCCTTGACCCCATTCATGTTCCTTCAAGATTCAATAACACAACCCATAATCTCCCTTGTTTTAGTCCCCCCCAGTATTATGGTATGATGGGAGAGAGCAGAGTGATGGCGTTTGGGAGCTGCAGTCAGGTCAGCCATGGCAGAGAGATGATGAAGCAGGAAGAAATAGTGGGTGTGCAGAATCAGAACTACAATGGGTGTGTTGGGGAAACCCTACTGGTTAATTATGATATGCAGGAGATTAAGAGACTGGTGGGTAGTAGTAGCAGCAGCAATGATGGCTATAACGGCAGCTTCTTCAATTTTGATGAATACAAGACAAGAGAGAAGGACATGTACTACTATTCATCAGTGTAA 822 0.4477 MGRAPCCDKANVKKGPWSPEEDSRLKEYIEKHGTGGNWIALPHKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICTLYANIGSRWSVIAAQLPGRTDNDIKNYWNTKLKKKLMGLLPLPPNSHHQIRNSPFHQSVSSSGYTDCASVLSSTGLDPIHVPSRFNNTTHNLPCFSPPQYYGMMGESRVMAFGSCSQVSHGREMMKQEEIVGVQNQNYNGCVGETLLVNYDMQEIKRLVGSSSSSNDGYNGSFFNFDEYKTREKDMYYYSSV 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1199 273 CDD SANT 70 111 IPR001005 -
Bisa12g1199 273 PANTHER OS09G0431300 PROTEIN 1 167 - -
Bisa12g1199 273 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Bisa12g1199 273 FunFam Transcription factor RAX3 7 68 - -
Bisa12g1199 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Bisa12g1199 273 SMART sant 13 64 IPR001005 -
Bisa12g1199 273 SMART sant 67 115 IPR001005 -
Bisa12g1199 273 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Bisa12g1199 273 CDD SANT 16 62 IPR001005 -
Bisa12g1199 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Bisa12g1199 273 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Bisa12g1199 273 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Bisa12g1199 273 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Bisa12g1199 273 Gene3D - 7 68 - -
Bisa12g1199 273 Gene3D - 70 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1199 Bisa-ChrBisa12 20393965 20394990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1199 1 131 MYB Transcription Factor Family AT2G36890 79.389 6.91e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bisa12g1199 Myb_DNA-binding 6.3e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g1199 12 20393965 20394990 Bisa02g3627 02 88717806 88719320 CCT