Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1188 ATGTGTCCTTTGGCTCGCTTTTCTGAAAACCAGAGAACCGGCACTCTCCTCCGCCCTTCCATTCACTCCATGCTCTCGTTTCGTGCAATCTTCTCTCCACCACTCTTTCACCGCATTACGGCTCTTCGTCATCTCCAGTTTTTTCTCCCACCCTCTAAAACCTTCACGTTGAAGTCCAACCTCTTGCCAACCCACAATTGCCGTCTCAGTATGTCGTCGCGACCTTCTGCTTTCGATGCTCTCATGTCCGGGGCTCGTGCCGCCGCCAAGAAGAAGCCCCAATCAACATCTCCCCAGAAACGAAAAACCCTAGATTCCAATTCAACCCAAAACCCTAAAAACCTAAAAAGCACGGAAATAACTGGTCAGTCTTCGGAACCCAGAAACGATACTAAATGTACTGACGTTAAAGATTCCGAGAAAGTACAAGAGCCGGCCAAGGAGGACTCGGGCAATGGTGGCTTGTCGGGGCTGGAGGGTACTCTGCCAGCGAAGAGAATGCGCGTTGTAAGTTCGCAGGATAAGATTGCAGAGTTGAAGAAAAAAATTTCTCTATTGAAGAAGAAGCCTGGAGATTTTGACCCTAGTTCGATATCTTGTTGGGACAAGGGTGAACCCGTGCCCTTTCTGTTTCTTGCTTTGGCATTTGATATGATTGCAGAAGAGACAGGACGGATTGTGATTACAGATATAGTGTGCAATATGTTGAGGACTGTCATATACACTACACCCGAAGATCTGGTGGTTGTTGTGTATCTTTCCGCAAATAAGATTGCTCCGGCACATGAAGGTTTGGAATTGGGAATAGGGGATGCTTCAATTATTAAGGCGCTTGCAGAGGCATGTGGAAGAAAAGAAGCGCAGATAAAAGATCAATATAAGGAAAAAGGTGATTTGGGCCTCGTTGCCAAAGCAAGCCGCTCATCTCAATCAATGATGAGGAAGCCTGATGCATTAACTATTAGGAAAGTTTTCAATACCTTTCGTCTTATTGCCAAGGAATCAGGTAAAGATAGCCAAGAGAAGAAAAAGAATCACATCAAGAGTCTTATTGTTGCTGCAACTGACTGTGAACCTCAATATCTAATTCGTCTACTTCAGACGAAGTTGCGAATTGGGTATGCGGAGCAAACTCTCTTAGCTGCACTGGGCCAAGCTGCAGTATACACTGAAGGACATTCCAAACCTCCTCCTGAAATCCAGTCTCCTTTAGAAGAGGCTGCAAAGATTGTTAAACAAGTATATTCTGTTCTTCCTGTCTATGACAAAATAATTTCTGCACTGCTTACTGGTGGTGTATGGAAACTTCCAGAGACATGTAACTTTACTCCTGGTGTTCCAGTTGGACCTATGTTGTCTAAAGCAACCAAGGGTGTATCTGAAGTTCTAAATAAATTCCAGGATGTAGAGTTTACCTGTGAATATAAATATGATGGAGAGCGTGCCCAGATACATTACATGGAGAATGATTCAGTTGAGATTTATAGTAGAAATGCTGAACGGAACACTGGAAAGTTTCCTGATGTTGTTGCTGCTGTTTCAAGGTTAAAGAAATCAGATGTGTTATCATTTGTTCTCGATTGTGAAATTGTTGCATATGACCGTGAGAAAAAGAAAATTCTTCCTTTCCAGGTTCTCAGTACTCGAGCTCGCAAAAATGTGTCTATGAGTGATATAAAGGTTGATGTATGCATATTTGCTTTTGATATTTTGTATCATAATGGCAAGCCACTTCTTCAGGAAACCCTGAAAATCCGCAGAGAGCATCTCTATGCCTCTTTTGAGGAAGAACCTGGACTCTTTCAGTTTGCAACGGCAATAACATCAAGTGATGTTGAGGAAGTACAGAAGTTTCTTGATACAGCTGTTGATGCAAGCTGTGAGGGTTTAATTATCAAAACTTTAGATGAAGATGCTACATATGAACCTTCCAAGCGGTCACTCAACTGGCTAAAACTGAAGAAAGATTATCTGGAAAATATAGGAGACTCGCTGGATTTGGTACCTATTGCTGCTTTCCATGGCCGTGGGAAACGTACAGGGGTCTATGGTGCTTTTCTCCTTGCTTGCTACGATAGCAATAATGAAGAATTTCAAAGCATTTGTAAAATAGGCACGGGATTCTCTGAGGCAGTGCTTGAAGAACGTTCTGCTAGTCTTCGTTCTAAAGTGATTCCCAAGCCGAAGTCATATTATCGATATGCAGAGACAATCAATCCTGATGTTTGGTTTGAAGCCTCTGAGGTGTGGGAGGTGAAAGCAGCAGACTTGACCATTAGCCCTGTTCACCGTGCTGCAGTGGGCATAGTAGATTCGTATAAGGGAATATCTCTTCGGTTTCCACGTCTAGTTCGAGTTCGGGATGACAAAGCTCCTGAACAAGCCTCGTCATCTGAGATGGTTGCTGAAATGTATTCTACTCAAAAACACAATCACCCAAACAACCAGGACGATGAAGAGGACTGA 2466 0.4327 MCPLARFSENQRTGTLLRPSIHSMLSFRAIFSPPLFHRITALRHLQFFLPPSKTFTLKSNLLPTHNCRLSMSSRPSAFDALMSGARAAAKKKPQSTSPQKRKTLDSNSTQNPKNLKSTEITGQSSEPRNDTKCTDVKDSEKVQEPAKEDSGNGGLSGLEGTLPAKRMRVVSSQDKIAELKKKISLLKKKPGDFDPSSISCWDKGEPVPFLFLALAFDMIAEETGRIVITDIVCNMLRTVIYTTPEDLVVVVYLSANKIAPAHEGLELGIGDASIIKALAEACGRKEAQIKDQYKEKGDLGLVAKASRSSQSMMRKPDALTIRKVFNTFRLIAKESGKDSQEKKKNHIKSLIVAATDCEPQYLIRLLQTKLRIGYAEQTLLAALGQAAVYTEGHSKPPPEIQSPLEEAAKIVKQVYSVLPVYDKIISALLTGGVWKLPETCNFTPGVPVGPMLSKATKGVSEVLNKFQDVEFTCEYKYDGERAQIHYMENDSVEIYSRNAERNTGKFPDVVAAVSRLKKSDVLSFVLDCEIVAYDREKKKILPFQVLSTRARKNVSMSDIKVDVCIFAFDILYHNGKPLLQETLKIRREHLYASFEEEPGLFQFATAITSSDVEEVQKFLDTAVDASCEGLIIKTLDEDATYEPSKRSLNWLKLKKDYLENIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAVLEERSASLRSKVIPKPKSYYRYAETINPDVWFEASEVWEVKAADLTISPVHRAAVGIVDSYKGISLRFPRLVRVRDDKAPEQASSSEMVAEMYSTQKHNHPNNQDDEED 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1188 821 MobiDBLite consensus disorder prediction 84 161 - -
Bisa12g1188 821 SUPERFAMILY Nucleic acid-binding proteins 662 808 IPR012340 -
Bisa12g1188 821 NCBIfam ATP-dependent DNA ligase 266 805 IPR000977 GO:0003910|GO:0005524|GO:0071897
Bisa12g1188 821 FunFam DNA ligase 659 818 - -
Bisa12g1188 821 MobiDBLite consensus disorder prediction 130 147 - -
Bisa12g1188 821 ProSiteProfiles ATP-dependent DNA ligase family profile. 556 692 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Bisa12g1188 821 Gene3D DNA ligase/mRNA capping enzyme 479 604 - -
Bisa12g1188 821 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 474 482 IPR016059 GO:0003909
Bisa12g1188 821 Pfam DNA ligase N terminus 208 383 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bisa12g1188 821 MobiDBLite consensus disorder prediction 789 821 - -
Bisa12g1188 821 ProSitePatterns ATP-dependent DNA ligase signature 2. 628 654 IPR016059 GO:0003909
Bisa12g1188 821 Gene3D - 460 658 - -
Bisa12g1188 821 CDD Adenylation_DNA_ligase_I_Euk 439 657 - -
Bisa12g1188 821 Pfam ATP dependent DNA ligase domain 450 654 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Bisa12g1188 821 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 191 441 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bisa12g1188 821 MobiDBLite consensus disorder prediction 90 129 - -
Bisa12g1188 821 Gene3D - 186 452 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Bisa12g1188 821 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 85 819 - -
Bisa12g1188 821 FunFam DNA ligase 450 656 - -
Bisa12g1188 821 Pfam ATP dependent DNA ligase C terminal region 679 790 IPR012309 GO:0003910|GO:0006281|GO:0006310
Bisa12g1188 821 FunFam DNA ligase 185 452 - -
Bisa12g1188 821 Gene3D - 659 820 IPR012340 -
Bisa12g1188 821 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 442 660 - -
Bisa12g1188 821 CDD OBF_DNA_ligase_I 662 805 - -
Bisa12g1188 821 Coils Coil 169 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1188 Bisa-ChrBisa12 20201522 20209686 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1188 54 821 Core DNA Replication Machinery Family AT1G08130 67.857 0.0 1083