Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1186 ATGCACAACATGGATCTTCACCAGGACACCCTAATTGCAATGAGTGACTTTGAGCTTCGTGATTTCACTCACAACCCCAATTTTGATCAATTCATCGATTTGCTTCGTGGGGATGAGAACGAAGACTACTCAATCTGTAACTTGGATTCTGATATTATCAATGGCTGCTTCGTCGATAACCAGTTTCCTCCATTTTCTTCAAACCCATTCGAGTTCAATGGTGCTTACGATCCGAGCTCGACGCTGAGCTCATTCTCGTGTTTTGATGGAGAAGTGAAGGTATTAGAAGAGGAAAATGATTCTTCTGCAACCACAGTTGCCACTAATGAAACGACTGCGAGGGGTAATAATGGTAATGCAAAACAGAGGCCTAAGACTGATAGGTCCAAGACTCTAATTTCTGAGAGGAGAAGGAGAGGTCGGATGAAGGAGAAGCTTTATGCATTGCGTTCTTTGGTTCCAAACATTTCTAAGATGGATAAGGCCTCGATCGTGGGAGATGCAGTATCATATGTGCAGGGGCTGCAAGGGCAAGCCAGGAAGCTGAAGGCTGAGGTTGCAGGGCTTGAAGCATCCTTGTTAGCCTCAGAAAATTATCAAGGATCAGTTAAAAGCTCCATGAAAGTTCAAAACAATCACAACATTAACTATCCAATCTGCAAGAAGATCACGCAGATGGACATGTTTCAAGTGGAGGAAAGAGGGTTCTATGTGAAGTTGGTGTGCAATAAAGGAGAAGGAGTGGCTTCTTCGCTGTACAAGACTCTTGAGTCTCTGGCGGGCTTCAATGTGCAGAATTCAAACTTGGCCACGGTTTCTGACAGATTTGTACTAACATTTACGTTGAATGTGAACAGTTACGAAGCAGAGATTGACCTGCAAAATTTGAAGCTGTGGGTGACAGGGGCACTTCTGAACCAAGGCTTTGAATTCATCACAACTTTTCATGCTTGA 954 0.4371 MHNMDLHQDTLIAMSDFELRDFTHNPNFDQFIDLLRGDENEDYSICNLDSDIINGCFVDNQFPPFSSNPFEFNGAYDPSSTLSSFSCFDGEVKVLEEENDSSATTVATNETTARGNNGNAKQRPKTDRSKTLISERRRRGRMKEKLYALRSLVPNISKMDKASIVGDAVSYVQGLQGQARKLKAEVAGLEASLLASENYQGSVKSSMKVQNNHNINYPICKKITQMDMFQVEERGFYVKLVCNKGEGVASSLYKTLESLAGFNVQNSNLATVSDRFVLTFTLNVNSYEAEIDLQNLKLWVTGALLNQGFEFITTFHA 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1186 317 MobiDBLite consensus disorder prediction 99 131 - -
Bisa12g1186 317 MobiDBLite consensus disorder prediction 99 120 - -
Bisa12g1186 317 Coils Coil 172 192 - -
Bisa12g1186 317 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 122 192 - -
Bisa12g1186 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 175 IPR011598 GO:0046983
Bisa12g1186 317 CDD bHLH_AtFIT_like 125 200 - -
Bisa12g1186 317 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 24 307 - -
Bisa12g1186 317 Gene3D - 116 192 IPR036638 GO:0046983
Bisa12g1186 317 Pfam Helix-loop-helix DNA-binding domain 133 176 IPR011598 GO:0046983
Bisa12g1186 317 SMART finulus 132 181 IPR011598 GO:0046983
Bisa12g1186 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 191 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1186 Bisa-ChrBisa12 20155940 20158268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1186 4 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 53.185 2.41e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bisa12g1186 HLH 3.9e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g1186 12 20155940 20158268 Bisa12g1186 12 20155940 20158268 ECH