Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1183 ATGGAGGGGATGGAGGAAGTGGAGTATGTGGGGTCGCCGAATAACGAAGCGAGTGTCACGCAAATCGTGAAGGGGAAGCGCACGAAGCGTCAGAGGCCGTTCTCGCCTTGTGCCGTTGTGGCAGGCATGACTTCGAGCTCATCGAGTGCTTCTGCGGACCACGAACACGTGAGTGGTGCGGCCGATTATGGCTCGATTTCCTCAACAACCACCACTCATAATAATTACGACATCAGCACTGATCTGGAAGAGGAAGACATGGCTAACTGCTTGATTCTCTTGGCCCAAGGACAACACGCTAATGCTTTTCCTCACCAAAATCAAAATCAGTCTCACGGGAGTAGTGGTGGTGGTGTTATCAAGGCGCCGGAGAGAGGAGCCACCCGGAGGTCCCCCGAGATGGCCACCGCGACGGCAGCCAAAATTGGGTTCTATTTGTATGAGTGCAAAACGTGTAACCGAGCGTTTCCGTCGTTTCAAGCGTTGGGCGGGCACAGGGCGAGCCACAAAAGGCCGAAGCTCGCGGTGGAGGAGAAAAAACCGTCACGGCCACCGCCACCGTCGTCTTCACCACAGCCGCCGCGGCCGCCGCCGATTTCATCTCAACTCATCAATAATTACGAGTTCGAAGAAGGTCAATTGAAAATTAGCTCTCAGATTTCGGTTCAATTAGGCAACAACAACGGAGTTCTTCAACAGAGTAACAAGGCGAAGGTTCACGAGTGTTCGATCTGTGGATCGGAGTTCACATCGGGGCAAGCATTGGGAGGGCACATGAGGAGGCATAGGGCGTCCACAACCGCAGGTTGTAACGCCGCCGGCACCGCTGCCGAGGTGGTGGTGAAGCCAAGAAATATTCTGGCGTTGGATCTGAACCTTCCGGCGCCGGAGGAGGATCTCCGGGAATCGAAGTATCATCAGTTCACGCCGAAACAAAAACCTAATTTGGTGCTGGCTGCTCCGTCTTTGGTGGACTGCCATTATTAG 987 0.542 MEGMEEVEYVGSPNNEASVTQIVKGKRTKRQRPFSPCAVVAGMTSSSSSASADHEHVSGAADYGSISSTTTTHNNYDISTDLEEEDMANCLILLAQGQHANAFPHQNQNQSHGSSGGGVIKAPERGATRRSPEMATATAAKIGFYLYECKTCNRAFPSFQALGGHRASHKRPKLAVEEKKPSRPPPPSSSPQPPRPPPISSQLINNYEFEEGQLKISSQISVQLGNNNGVLQQSNKAKVHECSICGSEFTSGQALGGHMRRHRASTTAGCNAAGTAAEVVVKPRNILALDLNLPAPEEDLRESKYHQFTPKQKPNLVLAAPSLVDCHY 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1183 328 ProSitePatterns Zinc finger C2H2 type domain signature. 149 169 IPR013087 -
Bisa12g1183 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 174 IPR013087 -
Bisa12g1183 328 MobiDBLite consensus disorder prediction 103 134 - -
Bisa12g1183 328 MobiDBLite consensus disorder prediction 163 201 - -
Bisa12g1183 328 Pfam C2H2-type zinc finger 147 172 - -
Bisa12g1183 328 Pfam C2H2-type zinc finger 239 264 - -
Bisa12g1183 328 ProSiteProfiles Zinc finger C2H2 type domain profile. 240 267 IPR013087 -
Bisa12g1183 328 Gene3D Classic Zinc Finger 144 262 - -
Bisa12g1183 328 ProSitePatterns Zinc finger C2H2 type domain signature. 242 262 IPR013087 -
Bisa12g1183 328 MobiDBLite consensus disorder prediction 181 200 - -
Bisa12g1183 328 PANTHER ZINC FINGER PROTEIN ZAT5 32 312 - -
Bisa12g1183 328 SMART c2h2final6 240 262 IPR013087 -
Bisa12g1183 328 SMART c2h2final6 147 169 IPR013087 -
Bisa12g1183 328 SUPERFAMILY beta-beta-alpha zinc fingers 146 262 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1183 Bisa-ChrBisa12 20113534 20114520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1183 20 328 C2H2 Transcription Factor Family AT2G28200 40.240 2.77e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa12g1183 zf-C2H2_6 1.1e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g1183 12 20113534 20114520 Bisa02g3607 02 88514384 88515166 CCT
Bisa12g1183 12 20113534 20114520 Bisa12g1183 12 20113534 20114520 ECH
Bisa12g1183 12 20113534 20114520 Bisa02g3607 02 88514384 88515166 ECH