Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1181 ATGAGCACAGTATCTGGTTTTCCATTTCAAGCCTCTGCTGAAGATCATAACAACTTGGCCTCACTTTCACACTCTGTTGAAGAATCAGCTTCTTCTCCGGCCTCCCCCACCTCCCTCCTCTTCAATCTCTCTGTTCTCAAAGACAAGCTCTCTCAGATGCAAACACTCGCTAGCGTTCTTATCTCCTCAGGTCAGAGCCTCCCAGATTCAACTTCCATGGCCATAGCCAGCATGAACTCCATAATCCAGGAATTCATAGTCACCGCCTCCTCCATGATGCTCACATGCCAACAAATGGTCCTTAATTTCGCTCCAGGTACTACGTTATTGCCTCAACCTCAATCCAACTTTGTGCACAGTAATAATACCAACAACACAGTCCAAGACAGAGGACAGAGTCTATTTTCAAGTTCTGATCAAACCCTGGACTGGTTTGGTTCCGAAAGCTATGATCATAACAATAATTGTGACCCAAGTGTTGAGATCAGCGAAATCAAGCCAGAGTTGTGTCAAGGGAATGAGAGTCAGGAAACCGATATTGAAACAAAGAACAGTGACATAATTGAATTGGGTGCTGATGATTTATTAGCTAAGTACACACATTACTGTCAAATCTGCGGGAAGGGGTTCAAGCGTGATGCGAATCTGAGGATGCATATGAGGGCTCACGGGGATGAGTACAAGACCAGCTCTGCTCTGAGCAACCCCATGAAGAACAGAGAAAAAGAGTGTAGTTCGATGAGCACAAGCGTTGTTGCTAGGCCAAAGAAGTACTCGTGTCCTCAAGAGGGGTGTAGGTGGAACCAGAGGCATGCAAAGTTCCAACCTTTGAAGTCGATGATATGCGTGAAGAATCACTACAAGAGAACCCACTGTCCCAAGATGTACGTGTGCAAGAGGTGCAATGTGAAGCAGTTCTCGGTGCTGTCGGATCTGAGGACGCACGAGAAGCACTGTGGGGATCAGAAGTGGCAGTGTTCGTGTGGTACTACGTTTTCCAGGAAAGACAAGCTCATGGGACATGTCGCTTTGTTCGTTGGACATGCTCCAGCTTCCTCTGCAGGAGTATTGAAGGTAGATGGTAGTTCAAGATGA 1095 0.4667 MSTVSGFPFQASAEDHNNLASLSHSVEESASSPASPTSLLFNLSVLKDKLSQMQTLASVLISSGQSLPDSTSMAIASMNSIIQEFIVTASSMMLTCQQMVLNFAPGTTLLPQPQSNFVHSNNTNNTVQDRGQSLFSSSDQTLDWFGSESYDHNNNCDPSVEISEIKPELCQGNESQETDIETKNSDIIELGADDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKTSSALSNPMKNREKECSSMSTSVVARPKKYSCPQEGCRWNQRHAKFQPLKSMICVKNHYKRTHCPKMYVCKRCNVKQFSVLSDLRTHEKHCGDQKWQCSCGTTFSRKDKLMGHVALFVGHAPASSAGVLKVDGSSR 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1181 364 FunFam Zinc finger protein 574 200 225 - -
Bisa12g1181 364 ProSitePatterns Zinc finger C2H2 type domain signature. 203 223 IPR013087 -
Bisa12g1181 364 Gene3D Classic Zinc Finger 182 262 - -
Bisa12g1181 364 Gene3D Classic Zinc Finger 294 344 - -
Bisa12g1181 364 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 27 353 IPR044300 GO:0010044|GO:0010447
Bisa12g1181 364 SUPERFAMILY beta-beta-alpha zinc fingers 199 226 IPR036236 -
Bisa12g1181 364 SMART c2h2final6 296 318 IPR013087 -
Bisa12g1181 364 SMART c2h2final6 201 223 IPR013087 -
Bisa12g1181 364 SMART c2h2final6 258 291 IPR013087 -
Bisa12g1181 364 Pfam Zinc finger, C2H2 type 201 223 IPR013087 -
Bisa12g1181 364 ProSiteProfiles Zinc finger C2H2 type domain profile. 201 228 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1181 Bisa-ChrBisa12 20067119 20068213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1181 38 351 C2H2 Transcription Factor Family AT5G22890 52.226 8.13e-115 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa12g1181 zf-C2H2 9.3e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g1181 12 20067119 20068213 Bisa12g1181 12 20067119 20068213 ECH