Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1169 ATGGCTATTGCTGGACTACACAATGTGTCTGTGCTTGACTCATCTTTCCTTAGGGATTCCCATTCTCAATCACCCAGGAGGCGTGGAGATGGAGGGAGTGGAAGCACCCGGTCATCTTCAATCTTGCAAATGTGGCGAGAGATTGAGGATGAGCATGTGGTGAGTCAAGTCCAGGGACGACCTGGTGAAGGATTGCTTCAACAAAGGAGTGATGAGTTCATTTCTGACCTCTCACAGGCAAGTGTGCCAGGTAGCCATGAGAGAGGACAGAGTCATGCTCTGGTAGATGCAATTTTGGGTGAGAATGATTGTGAAACATGGTCACAGTCGCAAAGTCAGCATGAATCCCATGATGATCAGGAGGAATTTAACAATTCTAGTTGTGATAATTCTTCTGATTTTGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATTTTCAGGGAATGGATGAATAGTGGTGCTAAGGATCATGCTTCAAACATTTCCCAAGGTAATAGCAGTTCAAGATCAGAATGGCTTGGTGAAACTGAGCAGGAGAGGGTGAGAATCATAAGGGAGTGGGTACAGTTGAGTAGCCAGCAGAGAGTTATTTCTTCTGGGGACAACAGGGAAGAACAATCAGCTGAAATTGGTACCCAAATAGAACGTGTTCGTGATGGATTCGCTGTTAATCAGAGTGAGGGTCAAATTGAGCATACACGGAAGGGTATTCGTAAATTATGTGGCAGACAGGTTCTGCTTGATATGCTGAAGAAGGCTGAGAGGGAAAGGCAAAGAGAAGTTCAGGAATTATCGGACCATCGAGCTGTGTCTAATTTTCCCCATCGCAACCGCATTCAGGCATTGCTTAGGGGTAGGTTCTTGAGAAATGATAGATCAGTTGATATTAACAGGTCCACTTCCATAGCTGAAAGTGAATTAGGTTTATTGAGGCAAAAACAGACTGTATCAGGCCTAAGGGAAGGATTTTTCTCTCGAAAGGACAGTTCCGGCAGCAGTCAAGTAACTTGCAATCTATCTGATACCTCATCTAACAGTGGCATTGATGCTAATTCAAATGAACAAACTGAAGCCAGTGGTTTACAAACTGTGCCAACTGTGCATTTTGAACAGTCTGAGCCTAATGAAAGAGGAAGTGATAGACTTGAGATGTCTGGTGATCGGAATTGTATACAGGGAACCATAATTGAAAATTTAGATTGTCAAGACTCTGCTGCTCATATAGGAGGGCGGCCGCCTCTTTTGGAAATTGAGTCAAGAGATTGTCAATCATCATCCAGTGTTGAGATGGAGAGAAGAGATAGCAGGGGACAAAATGGTGTTGGGACAACAATTGAAGATAGTGCTAATGGACTTATGCAACAAAATTTTCATATTGAAGAAACAGAACATATCAATGTGCAGGAATTTAGTGAGGTGCATCATGAAGAATCTGAACTGAGAGTTACAAGTAATGATGATAATGGTTTATCAACTCACAGCAACGATATGGAAGGCAATATGTTTGATGATGAAAATAGGAATGAAGCTGCTGCTCCGGAAGGACAGCAGCAGGAAGAAATTATTGAAAATGAAGGAAATGAGGCACATCAAACTAATGTTGAATGGAGTAATAGCATAGAGGAAAGCTTGGATGATAATCCTCTCAGTGGTACAGCCAATGAATGGCCTCAGAACATTTTGGGTAATGAAGATTTGGAAAGCTCTCATCTGCCAGAAGCCCCTGAGATGTGGCAAGAAGATGGTGGTTTTCAGGAGGCTGTTGAAAATTGGTTGGGTGGACCTTCTGATCACGGAGTTGCTGCAGTTGGTAGAATTCGTGGATTTTATTTCCCTGATGATGACAATGTGAACAGTGTGGAACTCAGGGAACTGCTAAATAGGAGAAGTGTCTCTAACCTCCTTCGCAGCAGTTTTCGTGACAGTCTTGACCAGTTGATACAATCATATGTTGAAAGGCAAGGCCATGCTCACGTTGAGTGGGAGCTGCAAGAAACTGCCCCTTCTTTGGCATCAGCTGAACAGGACCTGGAACAGCGGAGTAGGGATCAGATTGTTGGTCGGGATGATACTATGAACAGTCCTCTTGACCAGCACTCATCACCAGCGCCTCCTCAGCCTTTATGGGAACGGCAGTCACATCGTGACAACTGGCCACAAGCTGATATGAATAATCAGCGTCTAGGAATTGGGCATTCATTTTCTTTGGAGTGGGAGATTATCAATGATTTGAGAATTGACATGGCTAGGCTACAGCAAAGAATGAATAATATGCAGAGAATGCTGGAGACCTGTATGGATATGCAGCTTGAGTTGCAGCGCTCAATAAGGCAGGAAGTTTCTGCAGCCCTAAATCGCTCAGCTGGTTCATCAGAAATGCATGATGGTGATTCTCCAGATGATAAGTCTAAATGGGAATGTGTGAGAAAAGGACTTTGCTGTATATGCTGCGAGAGCAACATTGATTCTTTGTTGTACAGATGCGGGCACATGTGCATGTGTTCAAAATGTGCTAATGAGTTGTTCCAAAGTAGAAGAAAGTGCCCAATGTGTAAATCACCTGTGGTGGAGGTGATACGTGCTTATTCTATTCAATAA 2598 0.4349 MAIAGLHNVSVLDSSFLRDSHSQSPRRRGDGGSGSTRSSSILQMWREIEDEHVVSQVQGRPGEGLLQQRSDEFISDLSQASVPGSHERGQSHALVDAILGENDCETWSQSQSQHESHDDQEEFNNSSCDNSSDFGEVERERVRQIFREWMNSGAKDHASNISQGNSSSRSEWLGETEQERVRIIREWVQLSSQQRVISSGDNREEQSAEIGTQIERVRDGFAVNQSEGQIEHTRKGIRKLCGRQVLLDMLKKAERERQREVQELSDHRAVSNFPHRNRIQALLRGRFLRNDRSVDINRSTSIAESELGLLRQKQTVSGLREGFFSRKDSSGSSQVTCNLSDTSSNSGIDANSNEQTEASGLQTVPTVHFEQSEPNERGSDRLEMSGDRNCIQGTIIENLDCQDSAAHIGGRPPLLEIESRDCQSSSSVEMERRDSRGQNGVGTTIEDSANGLMQQNFHIEETEHINVQEFSEVHHEESELRVTSNDDNGLSTHSNDMEGNMFDDENRNEAAAPEGQQQEEIIENEGNEAHQTNVEWSNSIEESLDDNPLSGTANEWPQNILGNEDLESSHLPEAPEMWQEDGGFQEAVENWLGGPSDHGVAAVGRIRGFYFPDDDNVNSVELRELLNRRSVSNLLRSSFRDSLDQLIQSYVERQGHAHVEWELQETAPSLASAEQDLEQRSRDQIVGRDDTMNSPLDQHSSPAPPQPLWERQSHRDNWPQADMNNQRLGIGHSFSLEWEIINDLRIDMARLQQRMNNMQRMLETCMDMQLELQRSIRQEVSAALNRSAGSSEMHDGDSPDDKSKWECVRKGLCCICCESNIDSLLYRCGHMCMCSKCANELFQSRRKCPMCKSPVVEVIRAYSIQ 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1169 865 MobiDBLite consensus disorder prediction 155 172 - -
Bisa12g1169 865 MobiDBLite consensus disorder prediction 424 446 - -
Bisa12g1169 865 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 790 863 IPR013083 -
Bisa12g1169 865 MobiDBLite consensus disorder prediction 472 503 - -
Bisa12g1169 865 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 453 865 - -
Bisa12g1169 865 CDD mRING-HC-C3HC5_NEU1 813 862 - -
Bisa12g1169 865 Coils Coil 243 270 - -
Bisa12g1169 865 MobiDBLite consensus disorder prediction 154 174 - -
Bisa12g1169 865 MobiDBLite consensus disorder prediction 105 135 - -
Bisa12g1169 865 MobiDBLite consensus disorder prediction 688 712 - -
Bisa12g1169 865 ProSiteProfiles Zinc finger RING-type profile. 813 852 IPR001841 -
Bisa12g1169 865 Coils Coil 741 768 - -
Bisa12g1169 865 MobiDBLite consensus disorder prediction 326 372 - -
Bisa12g1169 865 MobiDBLite consensus disorder prediction 17 39 - -
Bisa12g1169 865 MobiDBLite consensus disorder prediction 325 385 - -
Bisa12g1169 865 SUPERFAMILY RING/U-box 812 858 - -
Bisa12g1169 865 Pfam Zinc finger, C3HC4 type (RING finger) 810 857 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1169 Bisa-ChrBisa12 19918935 19928133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1169 813 859 C3H Transcription Factor Family AT3G06140 42.553 3.81e-07 51.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g1169 12 19918935 19928133 Bisa02g3601 02 88431396 88435549 CCT
Bisa12g1169 12 19918935 19928133 Bisa12g1169 12 19918935 19928133 ECH