Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1148 ATGGCGGAGAACCGCGAGGGCGATAGGAATGAGAACAGTGATTACACGTCGGAGGACGAAGGGACTGAGGATTACAGGCGAGGAGGTTACCATGCGGTTCGAATTGGGGATACTTTCAAAAATGGGTGCTATGTGGTGCAGAGCAAGCTTGGGTGGGGTCATTTTTCCACTGTGTGGCTCGCTTGGGACGCCCAAAAATCGCGTTATGTAGCCTTAAAAATTCAGAAGAGTGCTCAGCACTATACCGAAGCTGCAATGGATGAAATAAAGATTCTCAAACAGATTGCAGAGGGGGACCCAGATGACAAGAAATGTGTTGTAAAGCTTTTGGATCACTTTAAGCATTCAGGGCCTAATGGCCAGCATGTATGTATGGTTTTTGAATTTCTGGGTGACAATCTTCTGACACTAATCAAGTATAGTGATTACCGAGGGATTCCCCTCCCCATGGTTAAAGAAATTTGTTACAATATTTTGGTCGGCTTGGATTACTTGCATCGTGAGCTTTCCATAATACATACAGATTTGAAGCCAGAGAATGTCTTGCTTCTGTCTATGATAGATCCATCTAAGGATCCCCGAAAGTCAGGTGCCCCCCTTATCCTTCCTAGCAGCAAGGGCAACTCTGCATCCAAGAATGAGGTCACAAAAGACAAAATTAGTTTGAATGGAAATCTGACCAAGAATCAGAAGAAGAAGCTGCGTAGAAAGGCTAAGAAGGTTGAGAATGAAAGTACTGAGGAAGCTGAGCACGTTTCTAAAGACCATGACCAAGAAGATTCTAGTAATGATCTGAAGTCAAATGCTGAATCTGTTGAAGATAAACCTGATAGTTCTTTGAGTAAAAATGAATCAACAAAGGTCATTGAAACTAAGGATGTTCCCCAGGGAAGTCATAGTCACAGAAGAAGTAGCCTTTCCACAAGAAAGAAGTTGCTTGCAGCTGTTGATCTTAAGTGCAAGCTGGTTGATTTTGGAAATGCTTGTTGGACTTATAAACAATTCACAAATGATATTCAGACAAGGCAGTATAGGTGCCCTGAGGTTATTCTTGGATCAAAATACTCAACTTCAGCGGATCTCTGGTCTTTTGCTTGCATTTGCTTTGAGCTTGTCACTGGTGACGTTCTTTTTGATCCTCACAGTGGTGACAACTATGACAGGGATGAGGATCATCTGGCATTGATGATGGAGCTTCTTGGAATGATGCCTCGCAAGATTGCACTAGGAGGCCGCTATTCTCGGGAATTTTTCAATAGATATGGTGATTTAAGGCACATTCGCCGGTTGCGTTTCTGGCCTCTTAGTAAGGTGCTAATGGAGAAGTATGATTTCAGTGAGCAAGATGCAAATGACATGGCTGACTTCCTTACTCCTATACTTGAATTTGTCCCTGAAAATAGGCCTACAGCTGCTCAGTGCCTTAGTCATACATGGTTCAGTTCTGGTCCTCGGATTCTTCAGCCCTCAGCTACCACCGTGCAACCTGAGGCCAAGGATGGGCGAATGTCTGAAAAATTGGAGCGGGATAAGGCCGAGCATGAAGCAGTGGAAGTTGGTGTCGGGAATATGGCCATTGATGTTACCCCAAAGCTACTCAAAGAGTCCCAAACTACAAAGTGA 1623 0.4399 MAENREGDRNENSDYTSEDEGTEDYRRGGYHAVRIGDTFKNGCYVVQSKLGWGHFSTVWLAWDAQKSRYVALKIQKSAQHYTEAAMDEIKILKQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGIPLPMVKEICYNILVGLDYLHRELSIIHTDLKPENVLLLSMIDPSKDPRKSGAPLILPSSKGNSASKNEVTKDKISLNGNLTKNQKKKLRRKAKKVENESTEEAEHVSKDHDQEDSSNDLKSNAESVEDKPDSSLSKNESTKVIETKDVPQGSHSHRRSSLSTRKKLLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELVTGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSREFFNRYGDLRHIRRLRFWPLSKVLMEKYDFSEQDANDMADFLTPILEFVPENRPTAAQCLSHTWFSSGPRILQPSATTVQPEAKDGRMSEKLERDKAEHEAVEVGVGNMAIDVTPKLLKESQTTK 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1148 540 MobiDBLite consensus disorder prediction 491 510 - -
Bisa12g1148 540 Gene3D Phosphorylase Kinase; domain 1 20 126 - -
Bisa12g1148 540 FunFam Serine/threonine-protein kinase SRPK-like protein 310 480 - -
Bisa12g1148 540 Gene3D Transferase(Phosphotransferase) domain 1 127 481 - -
Bisa12g1148 540 MobiDBLite consensus disorder prediction 1 23 - -
Bisa12g1148 540 FunFam CMGC/SRPK protein kinase 30 129 - -
Bisa12g1148 540 SUPERFAMILY Protein kinase-like (PK-like) 39 492 IPR011009 -
Bisa12g1148 540 Pfam Protein kinase domain 44 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa12g1148 540 Pfam Protein kinase domain 317 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa12g1148 540 ProSitePatterns Protein kinases ATP-binding region signature. 50 73 IPR017441 GO:0005524
Bisa12g1148 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Bisa12g1148 540 CDD STKc_SRPK 33 480 - -
Bisa12g1148 540 Coils Coil 224 251 - -
Bisa12g1148 540 ProSiteProfiles Protein kinase domain profile. 44 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa12g1148 540 MobiDBLite consensus disorder prediction 202 228 - -
Bisa12g1148 540 MobiDBLite consensus disorder prediction 192 306 - -
Bisa12g1148 540 SMART serkin_6 44 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa12g1148 540 MobiDBLite consensus disorder prediction 239 299 - -
Bisa12g1148 540 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 11 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1148 Bisa-ChrBisa12 19311917 19314645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1148 1 527 EF-hand Containing Proteins AT5G22840 68.797 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Bisa12g1148 Pkinase 9.8e-21 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g1148 12 19311917 19314645 Bisa12g1148 12 19311917 19314645 ECH