Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1140 ATGGAACCGCCAGTTGCCAGATCGAGGGGTCGGTCGAGGAAACGGGGGAGAAAAGAAGATGAAACTGAGGCTGATGATCGGGTGTCGGCGCCTGAAAAGAAAAAGCAAGCTCCTGGGACAAGATCAATTGCGTTGGTTGGACGATATGTACTGAAAGAGTTCCCAAAAAGTGAGGTTTTTCTTGGGAAGGTTGTATATTACGATCATGGCTTGTACAAAATCAATTACGAGGATGGTTATACTGAGGATTTAGATAGCAGTGAGATTCGAAGAATACTTCTTAATGACAGTTACTTCGATGATGATTTGACTCAAAGGAGGATTGAATTAGATGGTTTAATCTTGAAGAATAGTGTAAATTTAACAGATGGCTATGATAAGAATTCTGCTAACCCAAACAAGGATGTGTCCGGGGTTGACTCGCTTGTATCTAGTGGATTGCACGGTGGATTATCAATTGAAAACGGTGAGGAACAAGTTGAAGGGGATGCTGATTCATCAAGTGGTTCATGCTCAGGTTCAAAGGAACGGGATTCTGGTTCTGATTCTGAGACGCCGCCTTTACCACCATTGCAGTTGCCACCGTCTTCAGGAACTATTGGTGTCGCAGAGCCATATGTCCCACATCTCTTTGCAGTCTATGGTTTTTTACGATCATTTAGTACTCGCCTGTTTCTAAGCCCATTCTCTTTGGACGAGTTTGTTGGTTCTCTTAACTGCCGTGTTTCAAACACGTTGTTTGATGCCATTCATGTTACGCTGATGCGTGCATTGAGACGTCATCTTGAAATCCTTTCGTCTGAGGGCTCACAGCTTGCATCAAAATGCCTAAGGTGCAATGATTGGAGTTTGCTTGACATATTGACTTGGCCTGTTTTTGTGGTTCAGTATTTAGCAATTAATGGATATGTAAAGGGAGCTGAGTGGAAAGGATTTTGTGATGAAATTTATGAAGGCGAGTATTATTTATTACCCGCAAGTAGGAAGTTAATCATACTACAATGTCTCTGTGATGATGTTTTGGAGTCTGAGGAGCTAAAAGCTGAAATGAACATGCGTGAAGAATCAGAAGTTGGGACGGATTGTGATGTAGAAGATATCCTTCCTGCTGATGAAGTGCCAAGAACAGTCCATCCACGATATCCCAAAACTTCTGCTTGCAAGAACAAAGAAGCTATGGAGTTTGCTTCCGAATCAAACGCTGAGAAGCCATCTGGTAACTCTATTTCATATCTCAGGAATACTGAGAGGACTGAGGATGCCGATGTTGATGGAAATGGAGATGAATGTCGCCTCTGTGGCATGGATGGGACTTTACTCTGTTGTGATGGATGTCCTTCTGTATATCATTCAAGGTGTATTGGTGTGATGAAAATGTTTATGCCAGAAGGGCCATGGCTCAATGTCAATGGTGAATATTGTGTCAGATATTATAATCAAAATGACATTCCAAAAGTTCTTCAAGTGCTTTATGAATCCATGCAGCATAGACCTATGTACTATGATATATGCTTGGCAGTTTTACAATGTTGGAATATTCCAGAAAGTGTCCTACCTCTTTATTATAATACTGGAACAAATGTAAGTTCAGAAGATACCAATGAAGAAGCAAAGTTCTCGAGTTTATTATGTCCTTTGGGTGTAGAAGACCTTGAAGCTGTTAATCTGGTGAAGGTAGAGGACCCTGTAACCACTGTGGTGCAATCTTTTGATTCCACATCACTTACCACTGAAAGAGAGACTCCTGCTCCTGATAGCAGTGGCAACTGTAGAGCAAGGGGGTGCCCTACCATGAATATGAAGCTTCCTGTGGAAACTGGGATGGAGTCAGTTGTCACAGCTGAGTCTGTTACTCATCATTCTGACATAAACTACCAAAGTTCTGTTGATAGGGAAAGTGCAATAGATCCTGCTAATCAAAATTTGGCGAATAGCCATTTTAGTTATTGTGGTCATTCAAATGATTTGGGGTTACCTATTAATTCGTCCTTGCAAACTAAAGGAAGCAACCAATCCTTTTCTGGAAAATGTGAACGCAATTCAACTAATGATCTTGTATACATGGGTTGCTCCTTTAAACCTCAGTCATACATTAATTACTATATGCATGGGGATTTTGCTGCATCTGCTGCTGCTAAATTAACTGTTCTTTCATCAGAAGATTTTAGGTCTGAGAGTCACGTGTCAGACAATCAGAGGAAAGTTACATCCGGAAACAATTATTTGCAAGCAAAAGCATTCTCCTTAACAGCTTCACGCTTCTTTTGGCCAAGTTCTGAAAAGAAGCTTGTGGAGGTTCCAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGCAAAGCTGCAGTTTCAAGTAAGAAGGGATGTATGCTAAATCATGCTGCCTTAAGTGCCATCAAGAGTGCTATGAAAATCCTTGCTGGTCTTTGTCCTATAAGGAGTGTGGATGGGATTCTTCCTAGCATTGTAACATACATGATATACGTGGAGGAAACTTTACATGGTTTGATAGTTGGGCCCTTTGTAAGCCCAAGTTATAGAAAGCAGTGGCGTAAAAGAGTGGAAGAGGCTACATCAATCAGTGCTCTAAAACCACTTTTGCTTGAACTTGAGCAGAACATTCGTGTACTTGCTTTTACTGGAGACTGGGTTAAGCTGATGGATGATTGGTTGGCTGAATCTTATATGATTCAAAGTGCTGCATGTAGTGTTGGAATGAAACAGAAGCATGCACCGAGTGGGAGGCGTTTCAAGAAACAGTCCACTATTAAAGGAGTTAGAGCTGATGGCTGTCCTGAAAACAACTCTGTCTGGTGGCATGGTGGCAAACTTACCAAGTTTATATTCCAGAAAGCAGTTTTGCCGAAATCCATGGTCAGAAAAGCTGGTCGCCAAGGTGGGCGGAGGAAAATTTCTGGTATTTTCTATGTTGATGGCTCTGAAATTCCTAAAAGAAGCAGACAGTTAGTTTGGAGAGCTGCAGTTCAAATGAGTAGGAATGCATCACAGCTCGCACTTCAGGTTAGATACCTAGATTTTTATCTTAGATGGAGTGATCTGGTTCGTCCTGAACAGAACCTCCAGGATGGGAAAGGTCAAGAGTCTGAAGCTTCTGCTTTTAGAAATGCAAGTATACGTGATAGCAAACTTGTCAAGGACAAAATTTCTTATGGAATTGCTTTTGGGAGCCAAAAGCATCTTCCTTCCCGCATCATGAAAAATGTAATTGAAATAGAGCAAGGTCCAGAAGGAACGGAGAAGTATTGGTTTTTGGAAACAAACATTCCCTTATTTTTGGTGAAAGAGTATGAAAAACGCAAAGATAGAGTGCCATCTGATAAAGAGCACTTAAATTTGGCATCTCAATTGCACAGCAGGCATTTGAAAGCTACCTGCAAGGATATATTTTTCTACCTCACCTGCAAACGAGACAAGTTGGATATTTTATCATGTTCTGTATGCCAGCTGGGCATTTCAGTTAGGAATGCTTCTAGATGCAGTACATGTCAAGGTTATTGCCATGAGGGCTGTTCCACAAATTCAGTATCCACTAACAAGGAAGTTGAGTTTATGACCACATGCAAGCAATGTTATTATTCCAAATTGCGTGCTCTAAAAGAAAACAGCAATAAATCACCAATCAGTCCCTTTCTCTTACAAGGACAAGAACCTAGCTCTGTGACAGTTTTGAAGGGAGAAACGCCTAAATGTCATGACCAAACATTGACATCTACAAGGCCAAAGGGTACTTGTCCTGACTGGAAACAGGGTGCTTCTGATTCCACTTTGACAACAAAAGGCCGTCGTAGTTATTGTTCTTGGGGTATTATATGGAAAAAGAAGAGTAGTGAAGATGCAGGCATTGATTTCAGGCTTAAGAATATACTTTTGAAGGGAGGCTCTGGTGTACCTCAATTGGAACCTGTTTGTCATTTGTGTCGTAAGCCTTATAGGTCTGATCTGATGTATATTTGCTGTGAGACATGCAAAGATTGGTATCATGCTGAAGCTGTTGAACTTCAGGAGTCAAAATTTTTTGATGTGTTGAGCTTTAAGTGTTGCAAGTGTCGCAGGATAAAGTCACCTGTGTGTCCTTACTCTGATTTGAAGTACCATATGCATGAGGGCAAAAAGACACGCACAAGGACGTCAAAGAAAGTGCATTCCAGAGTGGGTTCTGATTCTGGAACTCTTTCCAAATTTAAAGATTGTGAGCCTGCTAGCTCATTCTTTCCCATAGAGGATGCCTCCGGACGAGATGGTGATCCTCTGCTTTTCCCTCTTTCAAGCAATAATCTAATTACAGAACCAAAATTAGAAGAGAATGTTGAGTTCAATGATGTCTCTGGTCTACGGCCTAAAAAGCTAACGGTGAAAAGGCATGTTAAGTGTGTGGGGGGTGGTTGTGATTCTTTTGAATGTAAATTTACGCATGCAGAAATTGTCACACATAACGAAACAAGTACTCTTTCCAAACCTACAGAGAAGACATCATCCCCTTCCGTAGAATATGACTCTGCTGTTCACTTTGATAGCAATCTGCCGAATGACAGTGGAAGTGTGAATTCTGAAAACATTGAGTTTGAACCCCATACCTACTTCTCGTTGACAGAATTGCTGCACTCAGATGATACTCAGTTTGAGGGACCTGGTGCATCTGGGAACTCGTCAAAATGTTCTGAGAATTCTCGGGCACCACAAGGTGTTCCTGAATATAAAACTGTTAGTTTGGCTGATAAATTTGAACCTGGAAGTTGTTTACAAGGCAGTGGTTATAGTTGTCGGCAATGCTTGCTGAAGGAACCTGCCCCTGATCTATTATGTGAGATTTGTGGGCTCTGGGTTCACCGCCACTGCTCCCCATGTATTGAATCACCGTCTAACTTAGAAAGCTGGAGATGCATTAATTGCAGGGAATGGCGATAG 4920 0.4157 MEPPVARSRGRSRKRGRKEDETEADDRVSAPEKKKQAPGTRSIALVGRYVLKEFPKSEVFLGKVVYYDHGLYKINYEDGYTEDLDSSEIRRILLNDSYFDDDLTQRRIELDGLILKNSVNLTDGYDKNSANPNKDVSGVDSLVSSGLHGGLSIENGEEQVEGDADSSSGSCSGSKERDSGSDSETPPLPPLQLPPSSGTIGVAEPYVPHLFAVYGFLRSFSTRLFLSPFSLDEFVGSLNCRVSNTLFDAIHVTLMRALRRHLEILSSEGSQLASKCLRCNDWSLLDILTWPVFVVQYLAINGYVKGAEWKGFCDEIYEGEYYLLPASRKLIILQCLCDDVLESEELKAEMNMREESEVGTDCDVEDILPADEVPRTVHPRYPKTSACKNKEAMEFASESNAEKPSGNSISYLRNTERTEDADVDGNGDECRLCGMDGTLLCCDGCPSVYHSRCIGVMKMFMPEGPWLNVNGEYCVRYYNQNDIPKVLQVLYESMQHRPMYYDICLAVLQCWNIPESVLPLYYNTGTNVSSEDTNEEAKFSSLLCPLGVEDLEAVNLVKVEDPVTTVVQSFDSTSLTTERETPAPDSSGNCRARGCPTMNMKLPVETGMESVVTAESVTHHSDINYQSSVDRESAIDPANQNLANSHFSYCGHSNDLGLPINSSLQTKGSNQSFSGKCERNSTNDLVYMGCSFKPQSYINYYMHGDFAASAAAKLTVLSSEDFRSESHVSDNQRKVTSGNNYLQAKAFSLTASRFFWPSSEKKLVEVPRERCGWCLSCKAAVSSKKGCMLNHAALSAIKSAMKILAGLCPIRSVDGILPSIVTYMIYVEETLHGLIVGPFVSPSYRKQWRKRVEEATSISALKPLLLELEQNIRVLAFTGDWVKLMDDWLAESYMIQSAACSVGMKQKHAPSGRRFKKQSTIKGVRADGCPENNSVWWHGGKLTKFIFQKAVLPKSMVRKAGRQGGRRKISGIFYVDGSEIPKRSRQLVWRAAVQMSRNASQLALQVRYLDFYLRWSDLVRPEQNLQDGKGQESEASAFRNASIRDSKLVKDKISYGIAFGSQKHLPSRIMKNVIEIEQGPEGTEKYWFLETNIPLFLVKEYEKRKDRVPSDKEHLNLASQLHSRHLKATCKDIFFYLTCKRDKLDILSCSVCQLGISVRNASRCSTCQGYCHEGCSTNSVSTNKEVEFMTTCKQCYYSKLRALKENSNKSPISPFLLQGQEPSSVTVLKGETPKCHDQTLTSTRPKGTCPDWKQGASDSTLTTKGRRSYCSWGIIWKKKSSEDAGIDFRLKNILLKGGSGVPQLEPVCHLCRKPYRSDLMYICCETCKDWYHAEAVELQESKFFDVLSFKCCKCRRIKSPVCPYSDLKYHMHEGKKTRTRTSKKVHSRVGSDSGTLSKFKDCEPASSFFPIEDASGRDGDPLLFPLSSNNLITEPKLEENVEFNDVSGLRPKKLTVKRHVKCVGGGCDSFECKFTHAEIVTHNETSTLSKPTEKTSSPSVEYDSAVHFDSNLPNDSGSVNSENIEFEPHTYFSLTELLHSDDTQFEGPGASGNSSKCSENSRAPQGVPEYKTVSLADKFEPGSCLQGSGYSCRQCLLKEPAPDLLCEICGLWVHRHCSPCIESPSNLESWRCINCREWR 1639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1140 1639 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 420 473 IPR013083 -
Bisa12g1140 1639 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 1155 1185 IPR017896 -
Bisa12g1140 1639 MobiDBLite consensus disorder prediction 162 176 - -
Bisa12g1140 1639 SUPERFAMILY FYVE/PHD zinc finger 400 467 IPR011011 -
Bisa12g1140 1639 MobiDBLite consensus disorder prediction 1 34 - -
Bisa12g1140 1639 MobiDBLite consensus disorder prediction 1 39 - -
Bisa12g1140 1639 Pfam DDT domain 207 261 IPR018501 -
Bisa12g1140 1639 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 308 351 IPR028942 -
Bisa12g1140 1639 CDD PHD_SF 1591 1635 - -
Bisa12g1140 1639 MobiDBLite consensus disorder prediction 1543 1565 - -
Bisa12g1140 1639 ProSiteProfiles DDT domain profile. 204 264 IPR018501 -
Bisa12g1140 1639 MobiDBLite consensus disorder prediction 570 584 - -
Bisa12g1140 1639 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1297 1372 IPR013083 -
Bisa12g1140 1639 PANTHER PHD FINGER FAMILY PROTEIN 471 1508 - -
Bisa12g1140 1639 SMART PHD_3 1148 1196 IPR001965 -
Bisa12g1140 1639 SMART PHD_3 1591 1636 IPR001965 -
Bisa12g1140 1639 SMART PHD_3 1307 1355 IPR001965 -
Bisa12g1140 1639 SMART PHD_3 429 475 IPR001965 -
Bisa12g1140 1639 MobiDBLite consensus disorder prediction 570 592 - -
Bisa12g1140 1639 MobiDBLite consensus disorder prediction 153 195 - -
Bisa12g1140 1639 SUPERFAMILY FYVE/PHD zinc finger 1303 1361 IPR011011 -
Bisa12g1140 1639 SMART testlast3 204 264 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1140 Bisa-ChrBisa12 19169251 19176741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1140 43 1639 PHD Transcription Factor Family AT5G35210 40.985 0.0 1058
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Bisa12g1140 DDT 5.6e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g1140 12 19169251 19176741 Bisa12g1140 12 19169251 19176741 ECH