Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1095 ATGTATAGCAATTTTAAGGAGCAAGCGATAGAGTACGTGAAGCAAGCCGTGCAGGAGGACAATGCTGGGAATTACGCGAAAGCGTTTTCTCTGTATATGAATGCGTTGGAGTACTTCAAGACCCATTTGAAGTACGAGAAAAATCCTAAGATTAAAGAAGCGATTACCCAGAAATTCACGGAGTATCTTCGGCGGGCAGAGGAGATCCGAGCTGTTCTCGATGACGGAGGGCCTGGCCCGGCGTCTAATGGGGACGCTGCAGTAGCGACACGGCCCAAGACGAAGCCGAAGGATGGGGAAGGAGATGGGGAGGATGCAAAGCTCAGGGCTGGGCTGAATTCAGCGATCATTCGGGAGAAACCCAACGTGAAGTGGAACGACGTCGCTGGGTTGGAAAGCGCGAAGCAAGCCTTGCAGGAGGCAGTTATTTTGCCCGTGAAGTTCCCCCAATTCTTCACTGGTAAAAGACGACCCTGGAGAGCATTTTTGTTGTATGGACCACCTGGAACAGGGAAATCATATTTGGCCAAGGCGGTTGCAACTGAAGCTGATTCCACATTTTTCAGTGTTTCTTCATCAGACCTGGTTTCTAAGTGGATGGGTGAAAGTGAAAAGCTAGTTTCAAACCTTTTCCAAATGGCACGAGAAAGTGCTCCGTCCATCATATTTGTTGATGAAATAGATTCTCTCTGTGGTCAGCGTGGGGAAGGCAATGAGAGTGAAGCTTCAAGACGAATCAAAACTGAACTTTTAGTGCAGATGCAGGGTGTAGGAAACAATGATCAGAAAGTTCTCGTTCTTGCAGCAACAAATACACCCTACGCTCTTGATCAGGCAATAAGGCGGCGTTTTGATAAGCGAATATACATTCCGCTACCAGAGTTGAAGGCTCGCCAAAGCATGTTTAAGGTGCATTTGGGAGATACTCCTCATAACTTGAGTGAAAGTGATTTTGAACACTTGGCTCGCAGGACAGAGGGATTTTCAGGTTCTGATGTATCCGTCTGTGTCAAGGATGTGTTGTTTGAACCTGTTCGTAAGACCCAAGATGCCATGTTCTTCTATAAGAATCCTGAAGGAATGTGGATCCCGTGTGGACCAAAACAGCAGGATGCCGTACAAATCTCAATGCAAGAGCTTGCTGCAAATGGACTCGCTTCTAAGATCCTTCCACCACCTATTACGAGAATAGATTTTGACAAGGTGCTGGCTAGACAAAGGCCTACAGTAAGCAAAGCTGACCTTGAGGTTCATGAGAGATTCACAAGGGAGTTTGGAGAAGAAGGTTGA 1290 0.4698 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFSLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKTKPKDGEGDGEDAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPELKARQSMFKVHLGDTPHNLSESDFEHLARRTEGFSGSDVSVCVKDVLFEPVRKTQDAMFFYKNPEGMWIPCGPKQQDAVQISMQELAANGLASKILPPPITRIDFDKVLARQRPTVSKADLEVHERFTREFGEEG 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1095 429 FunFam vacuolar protein sorting-associated protein 4A 294 409 - -
Bisa12g1095 429 PANTHER AAA DOMAIN-CONTAINING 16 427 - -
Bisa12g1095 429 ProSitePatterns AAA-protein family signature. 264 283 IPR003960 GO:0005524|GO:0016887
Bisa12g1095 429 MobiDBLite consensus disorder prediction 91 106 - -
Bisa12g1095 429 Gene3D - 121 417 IPR027417 -
Bisa12g1095 429 Gene3D - 294 409 - -
Bisa12g1095 429 SMART AAA_5 158 294 IPR003593 GO:0016887
Bisa12g1095 429 MobiDBLite consensus disorder prediction 73 106 - -
Bisa12g1095 429 SMART smart 2 79 IPR007330 -
Bisa12g1095 429 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 424 IPR027417 -
Bisa12g1095 429 FunFam Vacuolar protein sorting-associated protein 4 121 301 - -
Bisa12g1095 429 SUPERFAMILY MIT domain 2 81 IPR036181 -
Bisa12g1095 429 CDD RecA-like_VPS4 120 290 - -
Bisa12g1095 429 CDD MIT_VPS4 4 77 IPR045253 -
Bisa12g1095 429 Gene3D - 6 75 - -
Bisa12g1095 429 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Bisa12g1095 429 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Bisa12g1095 429 Pfam ATPase family associated with various cellular activities (AAA) 163 292 IPR003959 GO:0005524|GO:0016887
Bisa12g1095 429 Pfam Vps4 C terminal oligomerisation domain 362 426 IPR015415 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1095 Bisa-ChrBisa12 17756342 17759600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1095 157 350 Calmodulin-binding Proteins AT3G56690 37.245 9.53e-36 138