Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1076 ATGAAGAGCATAATGGAGATACCAGTAGTGTACAACTCTTCGCGCTCTGTAGCTACAGTTCCTTCCTATTGCGGGGAGCTTCTTGAGTTCTATAAGATGCCACGGGGAAAGACATATTCTTCATCAGTTGCTAAGCCATCTGAACCTGAAAAGCCAACTGACTCTGATGAGAAGGTTGATTTTGATGAAGAAAATGATCCTGATGAAACAATGGAAGAAGAAATTGAATATGAAGAAGTAGAAGAAGAAGAGGAGGAAGTGGAAGAGATAGAAGAGGAGGTGGAAGAAGAGGAGGACCCGGAGGAGGAGGAAGAGGAAGAGGTTGAAGAAGTAGAAGAAGACGATGCTGATCATGCCAATGAAACTGATTTGATCATTAGTGGTGGTGAGGCAAAGGTGGAAGATGAGGATGAGAAGAAAAAGCATGCTGAACTTCTTTCTCTTCCTCCTCATGGGTCTGAAGTATACATTGGTGGCATTCCTCATGATGCTTCAACAGAGGATTTGAAGGCTTTTTGTGAGTCTATTGGGGAAGTTACAGAGGTTAGGGTTATGAAAGGAAAAGATTCTGCTGAAAATAAGGGCTTTGGTTTTGTGACTTTCAGAAGTGTGGAATTGGCTTCTAAAGCCATTGATGAGCTTAATAATAAAGAATTTAAGGGTAAAAAGATAAAATGTTCAACATCTCAAGCAAAAAACCGTCTTTTCATTGGTAATGTTCCTAGAAGCTGGGGAGAGGAGGATTTGAGGAAGGTTGTAACTGAGATTGGGCCTGGAGTTACTACTGTAGAACTAGTTAAGGATATGAAGAATACAAACAATAATCGTGGCTTTGCTTTTATTGACTATTATAATCATGCATGTGCTGAATATTCAAGGCAAAAGATGATGAATCCAAAATTCAAGCTAGGTGACAATGCTCCAACGGTGAGCTGGGCTGACCCTAAAAATGCTGATTCCTCTGCTGCATCTCAGGTGAAGGCTGTGTATGTGAAGAATTTACCAAAGGATGTAACTCAAGACCAATTAAAGAAGCTTTTTGAACACCATGGGAAGATTACAAAGGTGGTTCTGCCACCAGCAAAGCCTGGGCAGGAAAAGAACAGAATTGGTTTTGTACATTTTGCGGAGAGGCCAAGTGCTATGAAGGCACTCAAAAACACTGAAAGATATGAATTAAATGGTCAAGTTTTGGAGTGCTCTCTAGCAAAGCCACAGGCTGATCAAAAGTCTGGAGGATCAAACTCTCAGAAGCCAGGATTGCTTCCAAGCTACCCACCCCATGTTGGTTATAATTTGGTTGGTGGTGCCTATGGTGGGCTCGGTGCAGGCTATGGTGCTGCAGGTCTTGCGCAGCCCATGATATATGGAAGGGGTCCAACTCCAACTGGAATGGCCATGATGCCCATGCTTTTGCCTGATGGACGAATTGGTTATGTCCTGCAACAACCAGGAGTGCAGCCACAAACCCCACCTTCACATCAGAGAGGTAGCAGGAATAGTGGAGGGAATAGCAGCAGGAACGCAGGCAGTTCAAGCAAGGGAAGGCACAACAATGATAGTGGCCAAGGTCGCAGATACCGCCCATATTAG 1593 0.4357 MKSIMEIPVVYNSSRSVATVPSYCGELLEFYKMPRGKTYSSSVAKPSEPEKPTDSDEKVDFDEENDPDETMEEEIEYEEVEEEEEEVEEIEEEVEEEEDPEEEEEEEVEEVEEDDADHANETDLIISGGEAKVEDEDEKKKHAELLSLPPHGSEVYIGGIPHDASTEDLKAFCESIGEVTEVRVMKGKDSAENKGFGFVTFRSVELASKAIDELNNKEFKGKKIKCSTSQAKNRLFIGNVPRSWGEEDLRKVVTEIGPGVTTVELVKDMKNTNNNRGFAFIDYYNHACAEYSRQKMMNPKFKLGDNAPTVSWADPKNADSSAASQVKAVYVKNLPKDVTQDQLKKLFEHHGKITKVVLPPAKPGQEKNRIGFVHFAERPSAMKALKNTERYELNGQVLECSLAKPQADQKSGGSNSQKPGLLPSYPPHVGYNLVGGAYGGLGAGYGAAGLAQPMIYGRGPTPTGMAMMPMLLPDGRIGYVLQQPGVQPQTPPSHQRGSRNSGGNSSRNAGSSSKGRHNNDSGQGRRYRPY 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1076 530 Gene3D - 41 233 IPR012677 -
Bisa12g1076 530 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 225 IPR000504 GO:0003723
Bisa12g1076 530 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 298 IPR000504 GO:0003723
Bisa12g1076 530 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 329 398 IPR000504 GO:0003723
Bisa12g1076 530 MobiDBLite consensus disorder prediction 407 421 - -
Bisa12g1076 530 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 327 405 IPR000504 GO:0003723
Bisa12g1076 530 MobiDBLite consensus disorder prediction 38 146 - -
Bisa12g1076 530 Gene3D - 234 314 IPR012677 -
Bisa12g1076 530 MobiDBLite consensus disorder prediction 404 423 - -
Bisa12g1076 530 Coils Coil 70 121 - -
Bisa12g1076 530 SMART rrm2_1 154 227 IPR003954 GO:0003676
Bisa12g1076 530 SMART rrm2_1 328 401 IPR003954 GO:0003676
Bisa12g1076 530 MobiDBLite consensus disorder prediction 128 146 - -
Bisa12g1076 530 SUPERFAMILY RNA-binding domain, RBD 150 319 IPR035979 GO:0003676
Bisa12g1076 530 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 42 522 - -
Bisa12g1076 530 FunFam RNA recognition motif-containing protein 53 233 - -
Bisa12g1076 530 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 231 IPR000504 GO:0003723
Bisa12g1076 530 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 234 314 - -
Bisa12g1076 530 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 233 315 IPR000504 GO:0003723
Bisa12g1076 530 MobiDBLite consensus disorder prediction 482 530 - -
Bisa12g1076 530 MobiDBLite consensus disorder prediction 483 518 - -
Bisa12g1076 530 SUPERFAMILY RNA-binding domain, RBD 324 423 IPR035979 GO:0003676
Bisa12g1076 530 Gene3D - 316 421 IPR012677 -
Bisa12g1076 530 CDD RRM_SF 155 227 - -
Bisa12g1076 530 SMART rrm1_1 328 401 IPR000504 GO:0003723
Bisa12g1076 530 SMART rrm1_1 154 227 IPR000504 GO:0003723
Bisa12g1076 530 SMART rrm1_1 234 311 IPR000504 GO:0003723
Bisa12g1076 530 MobiDBLite consensus disorder prediction 59 119 - -
Bisa12g1076 530 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 316 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1076 Bisa-ChrBisa12 17471380 17480564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1076 155 488 Eukaryotic Initiation Factors Gene Family AT4G34110 23.936 5.28e-12 66.6