Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1056 ATGTCTGGTTCGCGAGCTCCACCTACGTCGTCTCAGCCGCCGGAGCCTATCATGCACTCTATGAAGCGCCAGCTCCCATTCTCGTCCATGAAGCCCCCCTTTGTGGCTCCCGGAGATTATTATCGCTTCTCACCCGACCGTCGCCAACCTGCTCCCCAAGAAGCCGAGGCCGTCGTTGTTAAGTCTCCTCAATTGAAGCGGAAGAGTGACGCAGCCGATTATGAAGCTGATTCTGGTGATAGGATGATCCCTGGGTCTGCCGAAACAGCAGACAATCCTTTTCAGACACCTATATCAGGAAAGACGGGGAAGGCAAGAAAAGCCTCAAAACAAACAAAAAGCAACAGATCTGGACCTCAAACACCTGGTTCTATTGTTGGTTCTCCTTCGGGCAATAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCATTAGGTCTATTGACAAAGAAGTTCATTAATCTAATCAAACAAGCAGATGATGGTATTCTTGACCTGAATAAAGCTGCTGACACATTAGAGGTACAAAAGAGGAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGACTTATAGAAAAGAAGCTCAAGAACAGAATTCAATGGAAAGGACTGGATGTTTCAAGACCAGGAGAAGCTGATGATAATTTTGGTAGTTTGCAGGCAGAAGTTGAAAATCTTACCTTGGAGGAACGCCAATTAGATGAACAAATAAGGGAAATGCAGGAAAGACTAAGGAGCCTTAGTGAAGATGAAAACAATCAGAAGTGGCTTTTTGTCACTGAGGAAGATATAAAGGGCTTGCCTTGCTTCCTGAATGAAACCTTAATAGCCATTAAAGCTCCACATGGCACCACTTTGGAGGTCCCTGATCCTGATGAGGCTGTTGATTATCCCCAGAGGAGATACAGGATAGTCCTGAGAAGTACAATGGGCCCAATAGATGTTTACCTTGTTAGTAAATTTGAAGGAAAGTTTGAAGAGATTAATGGCCTTGAAGCAGCACCTAATCTTCCATCCAGTCCTGAGCTTAACAAACATCCAGCAACAGGAATCACGCAGGATAGAGAGAAGGACCTAGGTATGCAGGGACAATATGATCATGGAGCTTGTTCAGATTATGGTGCCTCACAGGACCTTGGGGGTGGGATCATGAAGATTGTTCCTTCGGACGTAGATAGCAATGCTGATTACTGGCTTTTATCAGATGCTGATGTGAGCATAACAGACATGTGGAGAACAGAACCTGGAGTTGAATGGAATGAACTTGATGCACTCAATGAGGATTATTTCATGACTCAAGTGAGCACGCCAAGACCCCAGACCCCTCCTTCAAACACAAGTGAAGTGCCCTCTTCTAACCCTCCAGGAGGTTGA 1383 0.4526 MSGSRAPPTSSQPPEPIMHSMKRQLPFSSMKPPFVAPGDYYRFSPDRRQPAPQEAEAVVVKSPQLKRKSDAADYEADSGDRMIPGSAETADNPFQTPISGKTGKARKASKQTKSNRSGPQTPGSIVGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQADDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDNFGSLQAEVENLTLEERQLDEQIREMQERLRSLSEDENNQKWLFVTEEDIKGLPCFLNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSKFEGKFEEINGLEAAPNLPSSPELNKHPATGITQDREKDLGMQGQYDHGACSDYGASQDLGGGIMKIVPSDVDSNADYWLLSDADVSITDMWRTEPGVEWNELDALNEDYFMTQVSTPRPQTPPSNTSEVPSSNPPGG 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1056 460 CDD E2F_DD 217 323 IPR032198 GO:0046983
Bisa12g1056 460 Gene3D - 135 208 IPR036388 -
Bisa12g1056 460 MobiDBLite consensus disorder prediction 1 138 - -
Bisa12g1056 460 MobiDBLite consensus disorder prediction 436 460 - -
Bisa12g1056 460 MobiDBLite consensus disorder prediction 61 77 - -
Bisa12g1056 460 SUPERFAMILY E2F-DP heterodimerization region 219 323 IPR037241 -
Bisa12g1056 460 Pfam E2F/DP family winged-helix DNA-binding domain 143 206 IPR003316 GO:0005667|GO:0006355
Bisa12g1056 460 Pfam E2F transcription factor CC-MB domain 222 322 IPR032198 GO:0046983
Bisa12g1056 460 FunFam E2F transcription factor 1 135 208 - -
Bisa12g1056 460 Coils Coil 219 253 - -
Bisa12g1056 460 SUPERFAMILY "Winged helix" DNA-binding domain 141 204 IPR036390 -
Bisa12g1056 460 MobiDBLite consensus disorder prediction 112 138 - -
Bisa12g1056 460 Gene3D - 214 323 - -
Bisa12g1056 460 SMART E2F_TDP_2 141 206 IPR003316 GO:0005667|GO:0006355
Bisa12g1056 460 PANTHER TRANSCRIPTION FACTOR E2F 89 420 IPR015633 GO:0000978|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1056 Bisa-ChrBisa12 17127354 17131253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1056 20 450 E2F-DP Transcription Factor Family AT5G22220 55.076 1.49e-151 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Bisa12g1056 E2F_CC-MB 1.1e-34 No_clan