Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1036 ATGGCTGAAATCGAAGTCCCTAAATATTTCATATGTCCGATTTCTCTTGAGATCATGAAGGATCCTGTGACTGCCATAACAGGCATCACGTACGACAGAGACAGCATCGAGCAGTGGCTTCTCACAGCAAAAGAAACCAAGTGTCCTGTCACGAAGCAGCCATTGCCAAGAGACTCAGATTTGACCCCAAACCATACCCTTCGCAGGCTAATCCAGGCATGGTCGTCGGAAAACGCACACAAAGGCGTCGTTTGGATTCCGACCCCCAAGCCCCCACTCACCGCCATCCTCGTCCACGAGCTCATCGCCGATCTTGGAGCTCCTCTGTTTCGTGAAACCACACTGAGAAGATTGCATGCTCTGGCCTCAGACAGCCAGAGGAACAGAAGGTGCATGGTGGAAGCTGGAGTTTGCAAAGCCATGGTTGACGTGATTATTAAGAGTTTCAAAGAAGGTACAGTTACAGAAGAAACGACGTCGTGTCTTGAAGAAGCCCTGAGAATTCTTCGTCTTCTCCGGGGTGCGTCAGCGTCGATCATGTCCGACATGAAGCTTCTCGTTTGTAAAAATTCAGATTTTATCGCCTCGTTGAAGTGGGTTCTGCGAACTCACGTAAACAACAACGTCAATATAGTAAACGAGGCAATGATTGTTTTGAAATCCACCATCGAAGCTGCAGATTCAAGCTTTCTGGGAAAACTAGAGGTTGATTTTTTCAGAGAAATAACAGGGGTGATCAGAAACAGAGGAATCTCAGAGCAGGCCATGAAATCTGCCTTACATTTGCTCATAGAAACTTGCCCACTAGGCAGAAACAGAACAAAAATGGTGGAATCCGGGGCTGTTTTTGAACTAATCGAGCTTGAGTTTGAAAAACCAGGGAAGAACATATCAGAGCTCATCTTCAACCTTCTGGCTCATCTGTGTTCGTGTGCTGATGGGAGAGAGAGGTTTGTACAGCACGCAGGGGGAATCGCTGTGGTTTCCAAGAGCATTCTGAGGGTTTCTCATGCAGTAGATGACAGAGCTGTTCATATATTTTCGTTGATAGCTAACTACTCGGCTTCGAAGGACGTCGTATTGGAGATGTTAAGGGTAGGAGCTGTGTCCAAGCTTTGCATGGTGATGCAGGCAGATTGTGATGCGTCTCTGAAAGAGAAAGCAAGGGCGATTCTCAAGTTACACTCCAACACTTGGAACAATTCTCCTTGTATTCAAGTGTACTTGCTAACCAGGCACCAGAGGTGA 1248 0.4696 MAEIEVPKYFICPISLEIMKDPVTAITGITYDRDSIEQWLLTAKETKCPVTKQPLPRDSDLTPNHTLRRLIQAWSSENAHKGVVWIPTPKPPLTAILVHELIADLGAPLFRETTLRRLHALASDSQRNRRCMVEAGVCKAMVDVIIKSFKEGTVTEETTSCLEEALRILRLLRGASASIMSDMKLLVCKNSDFIASLKWVLRTHVNNNVNIVNEAMIVLKSTIEAADSSFLGKLEVDFFREITGVIRNRGISEQAMKSALHLLIETCPLGRNRTKMVESGAVFELIELEFEKPGKNISELIFNLLAHLCSCADGRERFVQHAGGIAVVSKSILRVSHAVDDRAVHIFSLIANYSASKDVVLEMLRVGAVSKLCMVMQADCDASLKEKARAILKLHSNTWNNSPCIQVYLLTRHQR 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1036 415 SUPERFAMILY RING/U-box 4 80 - -
Bisa12g1036 415 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Bisa12g1036 415 SUPERFAMILY ARM repeat 108 406 IPR016024 -
Bisa12g1036 415 Gene3D - 91 407 IPR011989 -
Bisa12g1036 415 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Bisa12g1036 415 FunFam RING-type E3 ubiquitin transferase 6 80 - -
Bisa12g1036 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Bisa12g1036 415 CDD RING-Ubox_PUB 7 58 IPR045210 -
Bisa12g1036 415 PANTHER WDSAM1 PROTEIN 3 406 IPR045185 GO:0061630
Bisa12g1036 415 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1036 Bisa-ChrBisa12 16719922 16721169 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1036 3 412 U-box Gene Family AT3G11840 42.794 4.28e-105 317