Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1035 ATGGACGAACTCGAAGTTCCTTCCCACTTCCTCTGCCCCATTTCCCTGCAACTCATGCGAGACCCCGTCACGGTCTTCACAGGCATCACCTACGACAGAGAAAGCATCGAGAGATGGGTCTTCTCCTGCAATCGCAACACCTGCCCCGTCACGAAGCAACCGCTGTCAGACACAGAGCTAACCCCAAACCACACTCTTCGACGTCTGATCCAATCCTGGTGCACCCTCAACGCACCCTTTGGAATCGAACGCATCCCAACCCCAAAGCCACCCATCGACAAATCCCACATCCTCAAACTCCTCCACGAAGCCAACACATCGCCACATCACAATTCCCACCTCAAATGCCTCAGGGCCCTCAGATCCATCGTCCTCGAAAGCGATAGGAACAAGTCCTGCTTGCGCTCTGCAGGAGCCGTAGAATTCTTAGCTTCAATCTTGAAGTTTAGTAGTTGTAACGATAACGAGTGTAACGCAGCTATTGAGGTTCTGTTTCATCTAAATCCATCAGAGACCCACATGAAGAGTCTGATCAACGATGAAAAAATCCAGTTTACAGAGTCTCTGTTCCGGGTCTTAGAAAGAGGGGACTACCAGTCTCGAGCTTACGCTACAATGCTGTTAAAATCAGTCTTCGGAGTAGCCGATCCGACCCAATTGATGAACGTGAAAACAGAGTTATTCTCCCAGCTAAAGCGGGTCCTCCGTGATGGGATTTCCCAGCAAGCATCAAAAGCCGCGCTGAAACTCGTCGTGGAGCTCTGTCCATGGGGGAAAAACAGAGTGAAAGCGGTGGAAGCAGGGGTAGTTATGGCACTAATAGAGATGCTTCTGGAAGTTTCAGAGAGAAGAGCGTGCGAGCTGATGATGATAGCGTTGGACCAGCTATGCGGGTGTGCAGAGGGAAGAGCAGAGCTTGTGAAGCACGGCGCAGGGGTGGCGATAGTGGCGAAGAAGATCCTGAGGGTGTCTCATGTGGTGAATGATAGAGGGGTGAAGATATTGAGTTCGATTTGCAGGTATTCGGGGAATGGAAGGGTGGTGATGGAGATGTTGCAGGTGGGGGCAGTGAGTAAGCTGTACCTGGTGTTGCAGGTGGAGAGAAGCTTGAAGACGAAGGAGAGAGCGAAGGAGATGCTGAGGATGCACTCTAGGGCTTGGAGGACTTCGCCTTGCTTTCCTCTTCCTCTGCTTCAGTCATATCCTTCCTCGGATTGA 1218 0.514 MDELEVPSHFLCPISLQLMRDPVTVFTGITYDRESIERWVFSCNRNTCPVTKQPLSDTELTPNHTLRRLIQSWCTLNAPFGIERIPTPKPPIDKSHILKLLHEANTSPHHNSHLKCLRALRSIVLESDRNKSCLRSAGAVEFLASILKFSSCNDNECNAAIEVLFHLNPSETHMKSLINDEKIQFTESLFRVLERGDYQSRAYATMLLKSVFGVADPTQLMNVKTELFSQLKRVLRDGISQQASKAALKLVVELCPWGKNRVKAVEAGVVMALIEMLLEVSERRACELMMIALDQLCGCAEGRAELVKHGAGVAIVAKKILRVSHVVNDRGVKILSSICRYSGNGRVVMEMLQVGAVSKLYLVLQVERSLKTKERAKEMLRMHSRAWRTSPCFPLPLLQSYPSSD 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1035 405 Gene3D - 83 388 IPR011989 -
Bisa12g1035 405 FunFam RING-type E3 ubiquitin transferase 1 83 - -
Bisa12g1035 405 SUPERFAMILY RING/U-box 3 77 - -
Bisa12g1035 405 CDD RING-Ubox_PUB 7 60 IPR045210 -
Bisa12g1035 405 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Bisa12g1035 405 PANTHER WDSAM1 PROTEIN 3 394 IPR045185 GO:0061630
Bisa12g1035 405 SUPERFAMILY ARM repeat 97 382 IPR016024 -
Bisa12g1035 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 79 IPR013083 -
Bisa12g1035 405 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Bisa12g1035 405 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1035 Bisa-ChrBisa12 16699720 16700937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1035 2 402 U-box Gene Family AT2G35930 52.840 6.68e-156 444