Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1008 ATGACAAACTCAGACTCTGCAGTTAGAAGCAGAGGAGGCACTTTTTCTCTTTACAAGATGAACTACTGGAGCAGAGGCAGCATCGTGGGCCACGGCTCATCCGCCACCGTCTCCCTCGCCGCCTCTCCCCAGTCCGGCGACGTCTTCGCCGTCAAGTCATCGGAGCTTTCTCGCTCGGAGTTGTTGCAGAGAGAACAAAAAATCCTGTCTTGTTTATCCTCTCCTTATATAGTTAGCTACAGAGGATTCGATATCACTAAGGAGAACAACAATTTCGTGTACAATGTTTTCATGGAGTACATGCCTCACGGCACGCTCACTCAGGCGGCTCGCCGGGGCGGCGGCCGGATGGAGGAGTCAGAGGTCGCGTGCTACACACGGCAGGTTCTGCAGGGGCTGGAGTATCTACATTCAAATGGGGTGGTACATTGTGACATTAAGGGTACGAATATATTAATCGGTGAAGAAGGAGCTAAAATTGCAGACTTGGGATGTGCTAAGAGAGCGGCGGATACGGCGGAGCCGATCAGGGGGACACCGATGTTCATGTCGCCGGAGGTGGCGCGTGGGGAAGAACAGGGGTACCTCTGTGACATATGGGCACTTGGGTGCACTGTGATTGAGGTTACTACAGGGATTTCGCCATGGCCGAATGTGGGAGACCCTGTATCGGTGCTTTACCGGATCGCATATTCCGGCGAGGTGCCGGAGATTCCGGGTTTTCTATCGGAGGAAGCAAAGGATTTCTTGGGGAAGTGCTTAAGGAGGAATCCTAAAGAGAGATGGACGGCAAGTCAACTTCTTAAGCATCCGTTTCTTGGGGAATTGAAATCCAACTGTAAGCAAATCCAGGAATCTAATTCAAGCTCACCCACAAGTATTCTCGATCAGGGCTTTTGGAGTTGTGTGGAAGAATCAGAGTCTATCGTCAATTCGGTTCATTCAAGCTTAGAAGATTCTACGGCTGGTAGGATCAGACGCTTGGCTTTGAGTTCAGGGGAGCCCAATTGGACAGAGGATGAGGATTGGATCACAACCAGAAGGAATGAAATTGAAGCTTCTGGGATTTGTGGGTCAGAGAGAAGCAATGTTAGTAGTAGAATTAGTGGATTTTTTTGCGAGGATTATAGGGAAGTTAGTTTTCTATCCAGTAGTCTCAATTTTGAGAGAGGCATTGATCAAGTGCTACTCCGTTCAGTATCAAAATTTTCATAA 1215 0.4897 MTNSDSAVRSRGGTFSLYKMNYWSRGSIVGHGSSATVSLAASPQSGDVFAVKSSELSRSELLQREQKILSCLSSPYIVSYRGFDITKENNNFVYNVFMEYMPHGTLTQAARRGGGRMEESEVACYTRQVLQGLEYLHSNGVVHCDIKGTNILIGEEGAKIADLGCAKRAADTAEPIRGTPMFMSPEVARGEEQGYLCDIWALGCTVIEVTTGISPWPNVGDPVSVLYRIAYSGEVPEIPGFLSEEAKDFLGKCLRRNPKERWTASQLLKHPFLGELKSNCKQIQESNSSSPTSILDQGFWSCVEESESIVNSVHSSLEDSTAGRIRRLALSSGEPNWTEDEDWITTRRNEIEASGICGSERSNVSSRISGFFCEDYREVSFLSSSLNFERGIDQVLLRSVSKFS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1008 404 Pfam Protein kinase domain 25 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa12g1008 404 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 19 316 - -
Bisa12g1008 404 FunFam Mitogen-activated protein kinase kinase kinase 17 22 324 - -
Bisa12g1008 404 SUPERFAMILY Protein kinase-like (PK-like) 20 319 IPR011009 -
Bisa12g1008 404 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Bisa12g1008 404 ProSiteProfiles Protein kinase domain profile. 23 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa12g1008 404 Gene3D Transferase(Phosphotransferase) domain 1 18 331 - -
Bisa12g1008 404 CDD STKc_MAPKKK 23 273 - -
Bisa12g1008 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Bisa12g1008 404 SMART serkin_6 23 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1008 Bisa-ChrBisa12 16204654 16205868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g1008 20 349 MAP Kinase Kinase Kinase AT1G05100 53.801 2.14e-116 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Bisa12g1008 Pkinase 9.2e-54 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g1008 12 16204654 16205868 Bisa02g3430 02 85264663 85265826 CCT
Bisa12g1008 12 16204654 16205868 Bisa12g1008 12 16204654 16205868 ECH