Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0987 ATGAAACAGCTGATGGCTGTGTCTCTGATGATTTGGATTTGGGTAATCCTTAACGGTATTGCTCACTGCCAAAGGCCTGCGTCTGTGAATATTGGTGCAGTTTTCACTTTTGATTCGGTGATAGGTAAAGCTGCAAAGCCGGCCATAGAAATGGCTGTCTCTGATGTCAATGCAGACCCGGTAGTTCTTAATGGGACGAAACTGAAGTTGATAATGGAGGATGCCGGTTGCAGCGTCTTTTTGGGATCAATTGGAGCGTTTCGGGCACTTGAGCAAGGGGTTGCTGCCATAATTGGCCCGCAGTCATCTTCTATAGCTCAAGTGATTTCTCAAATTGCCAATGGTCTCCAAGTGCCTCTTATATCATATGCTGCCACTGATCCAACCCTGTCAGCCCTCCAGTTTCCTTTCTTTTTTCGTACTACACCAAGTGACTCTGAGCAGATGACTGCAATGGCTGATTTCGTTGACTTTTATGGATGGAAAGAGGTCATTGCTGTCTTCTTGGATGATGATTATGGAAGAAATGGAATATCTGCCTTGGGTGATGAACTTGAAAAACGGAGATTGAGAATTGCTCACAAGTTACCTTTCAGTGTTCAGTTTGATCTGGACGAAATCACTAACTTGCTCAATCAATCCAAAACGTTTGGTCCTCGTGTCTATGTTGTTCATGTCAACCCAGATCCCAGATTAAGAATTTTTCATGTAGCCCACAAACTTCAAATGATAGCTAGTGACTATGTCTGGCTTGCCACAGAATGGCTCTCTGCTACCCTAGATTCATTCTCTGCACAGAATCAGACCTCTCTCAGTGTCCTGCAAGGAGTGGTTGTGCTTCGTCCACACATTCCAGATTCTGTCCAGAAAAGAGATTTTCTTTCACGGTGGATAAAAATGCAGAATGAAAGTGCCACGAGTATTGGCTTGAACACATATGGATTTTATGCCTATGATTCAATTTGGGCTTTTGCACGTTCAATTGATAAGTTCATTGAAATACACAAAAATATTACATTCTCTGTCAATGAAAACTATAAGCTACTTCATAGCGATGCAGTTGATATTCAGCTTGACAAGCTCAAAGTCTTTGCTGGTGGATCTGATTTGATCAACATATTACTACAGTTAAATTTTACAGGTGTTAGTGGTCAACTTAAATTTAAAAGAGACAGGAATATCGTAAGTGGTGGCTATGATGTTATCAATATCAATCAGATGAAAGTAGTTAGGGTTGGATATTGGTCTAATCCTTTAGGATTTTCAGTCATACCTCCTGAAACTCTTAAAAAGAAAGGACATGGCAAAGTTCCCCGAGATCAGAAGCTCAACAACATCACATGGCCAGGTGGAAAGACAGGAAGACCACGTGGCTGGGTGATTGCTGACAATGCAAGGCCACTGAGAATTGGAGTTCCAAGGAGAGCAAGTTTTGTTGAATTTGTCACTGAACTGCCTGATAGTCATCAAGTTCAAGGATACTGCATTGATGTCTTCAAGAAAGCACTGGAGTTCATTCCCTATGAAGTTCCTTATGTATTTAAGCCTTTTGGGAATGGTCAATCAAATCCCAATTATGATGCACTTGTCAAGATGGTTGCTGAAGATGTATACGATGCAGTTGTTGGAGACATAGCAATTGTGACAAACCGCACAAGGATTGTGGATTTTTCTCAGCCTTTTGCATCAACTGGCCTTGTTATAGTGGTTCCAATCAATAATTCAAAACCAAGTGCTTGGGTATTTCTTCAACCATTTACCGCTGATATGTGGTGTGTCACTGGAGCTTCATTTATAATGGTTGGAGTTGTTATATGGATTCTTGAGCACCGAGTCAATAATGATTTCCGTGGTCCTCCTAAGAGGCAACTTGTGACAATGTTTATGTTCAGCCTCTCAACACTTTTTAAGACAAACCAGGAAAATACAGTAAGCTCACTTGGTCGATTGGTGATGATAGTATGGCTGTTTCTATTGATGGTGATCACATCCAGCTATACAGCAAGTTTGACTTCAATTCTTACAGTGGAACAACTTTCATCACCCATCACAGGAATTGATAGCTTGATTGCAAGTAACTGGCCAATAGGGTACCAAGTTGGGTCATTTGCTTACAACTATTTGACAGAGACTCTTTATGTACCGCGATCAAGACTCATTCCTCTCGGTAACCCAGAGGAATATGCAAAAGCTCTGCAGCAAGGGCCTGCTCGAGGAGGGGTGGCGGCTATCATAGATGAGCTTCTATATGTGGAGTTATTCCTCTCAAAACAAACTGATTTTGGTATTATTGGACAGCCATTTACCAGAAGCGGTTGGGGATTTGCTTTTCAAAGAGGGTCTCCTCTTGCCCTTGACATGTCTACTGCAATGTTGAAACTCAGTGAGAATGGAGAGCTTCAGAAGATACGAAAGCAGTGGTTCTGTAAGATGGATTGTCCTGAAGAAAGGACAAGCGACTCTGAGCCTGACCAACTTCACTTGATCAGTTTTTGGGGTTTATATCTCTCATGCGGCGTTGCCACTCTCGGCGCTCTTCTGGTGTTTCTGCTGCGAACAATTCGCCAGTATGTCCGATACAAACGACGGCAAAAAGATGTTTCTTCATGCCAGGAGGATTCAGATGGTAAATGTTCCCACGTTATTTATAGCTTTTTCAACTTCATTGATGAGAAGGAAGAAGCCATCAAGAAAATGTTCACTCACTCTGAAAATCCACAACAGCAGCAGAGCTGA 2736 0.4207 MKQLMAVSLMIWIWVILNGIAHCQRPASVNIGAVFTFDSVIGKAAKPAIEMAVSDVNADPVVLNGTKLKLIMEDAGCSVFLGSIGAFRALEQGVAAIIGPQSSSIAQVISQIANGLQVPLISYAATDPTLSALQFPFFFRTTPSDSEQMTAMADFVDFYGWKEVIAVFLDDDYGRNGISALGDELEKRRLRIAHKLPFSVQFDLDEITNLLNQSKTFGPRVYVVHVNPDPRLRIFHVAHKLQMIASDYVWLATEWLSATLDSFSAQNQTSLSVLQGVVVLRPHIPDSVQKRDFLSRWIKMQNESATSIGLNTYGFYAYDSIWAFARSIDKFIEIHKNITFSVNENYKLLHSDAVDIQLDKLKVFAGGSDLINILLQLNFTGVSGQLKFKRDRNIVSGGYDVININQMKVVRVGYWSNPLGFSVIPPETLKKKGHGKVPRDQKLNNITWPGGKTGRPRGWVIADNARPLRIGVPRRASFVEFVTELPDSHQVQGYCIDVFKKALEFIPYEVPYVFKPFGNGQSNPNYDALVKMVAEDVYDAVVGDIAIVTNRTRIVDFSQPFASTGLVIVVPINNSKPSAWVFLQPFTADMWCVTGASFIMVGVVIWILEHRVNNDFRGPPKRQLVTMFMFSLSTLFKTNQENTVSSLGRLVMIVWLFLLMVITSSYTASLTSILTVEQLSSPITGIDSLIASNWPIGYQVGSFAYNYLTETLYVPRSRLIPLGNPEEYAKALQQGPARGGVAAIIDELLYVELFLSKQTDFGIIGQPFTRSGWGFAFQRGSPLALDMSTAMLKLSENGELQKIRKQWFCKMDCPEERTSDSEPDQLHLISFWGLYLSCGVATLGALLVFLLRTIRQYVRYKRRQKDVSSCQEDSDGKCSHVIYSFFNFIDEKEEAIKKMFTHSENPQQQQS 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0987 911 FunFam Glutamate receptor 463 579 - -
Bisa12g0987 911 Pfam Receptor family ligand binding region 46 405 IPR001828 -
Bisa12g0987 911 CDD GluR_Plant 466 808 - -
Bisa12g0987 911 Pfam Ligand-gated ion channel 809 841 IPR001320 GO:0015276|GO:0016020
Bisa12g0987 911 SUPERFAMILY Periplasmic binding protein-like II 446 808 - -
Bisa12g0987 911 PIRSF IGluLR_plant 1 911 IPR017103 -
Bisa12g0987 911 SMART GluR_14 469 810 IPR001320 GO:0015276|GO:0016020
Bisa12g0987 911 SUPERFAMILY Periplasmic binding protein-like I 23 459 IPR028082 -
Bisa12g0987 911 Gene3D - 48 396 - -
Bisa12g0987 911 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 29 873 IPR015683 -
Bisa12g0987 911 FunFam Glutamate receptor 705 812 - -
Bisa12g0987 911 CDD PBP1_GABAb_receptor_plant 30 425 IPR044440 -
Bisa12g0987 911 Gene3D - 738 815 - -
Bisa12g0987 911 Gene3D - 578 709 - -
Bisa12g0987 911 Pfam Bacterial extracellular solute-binding proteins, family 3 480 808 IPR001638 -
Bisa12g0987 911 Gene3D - 144 418 - -
Bisa12g0987 911 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 102 130 - -
Bisa12g0987 911 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 42 58 - -
Bisa12g0987 911 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 317 329 - -
Bisa12g0987 911 Gene3D - 460 577 - -
Bisa12g0987 911 FunFam Glutamate receptor 144 310 - -
Bisa12g0987 911 FunFam Glutamate receptor 579 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0987 Bisa-ChrBisa12 15795315 15800020 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0987 6 911 Ion Channels AT2G32400 56.579 0.0 1050
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa02g3402 02 84868957 84873309 Bisa12g0987 12 15795315 15800020 CCT
Bisa12g0987 12 15795315 15800020 Bisa12g0987 12 15795315 15800020 ECH