Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g0982 ATGCCAGCCGGTATGATGATTCCGGCGAGGAACATGCTTTCCATGATTGCACGAAACGGCAACGTTTCTGGGTTCGGATCATCCTCATCACCTCTCTCTCTCGCCCAGCCAAACATGATGATGGAAGGCCAGCTCCACCCTCTGGACATGGCTCCCAACACCTCCGAGAGCGATGTTCCTCGCATCCGAGAAGACGACTTCGACAGCGCCACCAAGTCCGGTAGCGAAAACCTAGAAGGCGCCTCCGGCGACGACCAAGACCCCCGCCCCAAGAAGAAACGCTACCACCGCCACACCCAGCACCAGATCCAGGAAATGGAAGCTTTCTTTAAGGAGTGTCCACACCCAGATGACAAGCAAAGGAAGGAGCTCAGCCGAGAATTAGGGTTAGAGCCATTGCAGGTCAAGTTTTGGTTCCAAAACAAGCGCACTCAGATGAAAACCCAACATGAGAGGCAAGAGAACACACAACTTAGAACTGAAAACGAGAAGCTTCGGGCTGACAACATGAGGTATAGAGAAGCTCTCAGCAACGCCTCATGTCCCAATTGTGGTGGACCAACCGCCATAGGTGAAATGTCTTTCGATGAGCATCACTTGAGAATCGAAAATGCACGCCTAAGAGAAGAGATCGATAGAATTTCAGCGATTGCTGCGAAGTACGTGGGAAAGCCCGTGGTGAACTATCCACTGCTATCACCTACGGTTGGTCCGAGACCATTGGAGCTAGGGGTGGGTGGTGGTGGTGGTTTTAGCGGGGAAATGTATGGAGGAGGAGATGTTGTGAGGACGATGAGTGGGCCCACCGAAGCTGACAAGCCATTGATAATAGAGCTGGCTGTGGCTGCCATGGAGGAGCTTGTGAGGATGGCTCAGATGGGTGAGCCCTTGTGGATAACCACCATCGATGGCTCGGCTATGTTAAACGAGGATGAATATGTTAGAACCTTTCCTCGTGGGATTGGTCCAAAACCTCCTGGCTTCAAGTGTGAAGCTTCACGAGAAACTGCTGTTGTCATTATGAATCATATTAATCTTCTTGAGATCATCATGGATGTGAATCAGTGGACCACAGTTTTCTCAGGGATAGTCTCAAGAGCAATGACCCTGGAAGTATTATCAACAGGAGTGGCTGGGAACTACAATGGTGCCTTGCAAGTGATGAAAGCAGAGCTACAAGTACCTTCGCCTCTAGTGCCAACTCGGGAGAGTTATTTTGTAAGGTATTGTAAACAGCATGGGGATGGGAGTTGGGCAGTAGTGGATGTGTCCCTAGATAACTTGCACCCTAGTCCCACTGTGAGATGCAGAAGAAGGCCCTCTGGTTGCTTAATTCATGAAATGCCCAATGGCTACTCAAAGGTGACATGGGTTGAGCATGTAGAAGTGGACGACAGAGGCGTTCATGATCTATACAAGCAGCTTGTAAGCTCAGGACATGCCTTTGGTGCAAAACGTTGGGTTGCTACTTTGGATCGTCAATGTGAAAGGCTTGCTAGTTCCATGGCATCCAACATTCCTACGGTTGATGTTGGCGTGATAACAAACCAAGAAGGGAGGAAGAGCATGCTGAAGCTGGCGGAGAGAATGGTGATGAGCTTCTGTGCAGGAGTGAGTGCTTCTACTGCTCACACGTGGACCACACTGTCTGGAACTGGGGCTGATGACGTCAGGGTGATGACACGTAAGAGTGTGGATGACCCTGGAAGGCCTCCTGGTATTGTTCTTAGTGCTGCAACTTCTTTTTGGCTTCCTGTTCCTCCAAACCGAGTCTTTGATTTCCTTCGTGATGAGAACTCCAGAAGTGAGTGGGATATTCTTTCAAACGGTGGAGTTGTCCAAGAAATGGCACACATAGCTAATGGGCAAGACACAGGAAACTGTGTATCACTACTTCGGGTAAATAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGCTGCACAGACTCATCAGGCTCGTATGTGATATATGCTCCTGTGGACATCGTAGCCATGAACGTAGTTCTAAATGGAGGGGACCCTGATTACGTGGCACTTCTTCCTTCTGGATTTGCTATTCTTCCGGATGGAACCACAGGCCATGGAGGCTCTCTCCTCACTGTGGCTTTCCAAATTTTGGTTGACTCAGTTCCAACAGCCAAGCTGTCTCTTGGATCTGTGGCCACTGTTAATAATCTCATTGCCTGCACTGTTGAGAGAATCAAGGCTTCTTTGTCCTGTGAAGCTGCTTGA 2244 0.4933 MPAGMMIPARNMLSMIARNGNVSGFGSSSSPLSLAQPNMMMEGQLHPLDMAPNTSESDVPRIREDDFDSATKSGSENLEGASGDDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERQENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRIENARLREEIDRISAIAAKYVGKPVVNYPLLSPTVGPRPLELGVGGGGGFSGEMYGGGDVVRTMSGPTEADKPLIIELAVAAMEELVRMAQMGEPLWITTIDGSAMLNEDEYVRTFPRGIGPKPPGFKCEASRETAVVIMNHINLLEIIMDVNQWTTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMKAELQVPSPLVPTRESYFVRYCKQHGDGSWAVVDVSLDNLHPSPTVRCRRRPSGCLIHEMPNGYSKVTWVEHVEVDDRGVHDLYKQLVSSGHAFGAKRWVATLDRQCERLASSMASNIPTVDVGVITNQEGRKSMLKLAERMVMSFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPNRVFDFLRDENSRSEWDILSNGGVVQEMAHIANGQDTGNCVSLLRVNSANSSQSNMLILQESCTDSSGSYVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCEAA 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g0982 747 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981|GO:0006355
Bisa12g0982 747 Gene3D - 311 493 IPR023393 -
Bisa12g0982 747 MobiDBLite consensus disorder prediction 66 100 - -
Bisa12g0982 747 SMART HOX_1 90 153 IPR001356 GO:0003677
Bisa12g0982 747 Pfam Homeodomain 92 147 IPR001356 GO:0003677
Bisa12g0982 747 SUPERFAMILY Bet v1-like 269 499 - -
Bisa12g0982 747 CDD homeodomain 92 150 IPR001356 GO:0003677
Bisa12g0982 747 Coils Coil 148 175 - -
Bisa12g0982 747 CDD START_ArGLABRA2_like 273 496 - -
Bisa12g0982 747 SUPERFAMILY Bet v1-like 516 739 - -
Bisa12g0982 747 SUPERFAMILY Homeodomain-like 79 149 IPR009057 -
Bisa12g0982 747 FunFam Homeobox-leucine zipper protein HDG1 79 165 - -
Bisa12g0982 747 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 89 742 IPR042160 -
Bisa12g0982 747 ProSiteProfiles START domain profile. 269 500 IPR002913 GO:0008289
Bisa12g0982 747 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677
Bisa12g0982 747 Gene3D - 79 166 - -
Bisa12g0982 747 SMART START_1 278 497 IPR002913 GO:0008289
Bisa12g0982 747 FunFam Homeobox-leucine zipper protein GLABRA 2 278 496 - -
Bisa12g0982 747 Pfam START domain 279 497 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g0982 Bisa-ChrBisa12 15746886 15751326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa12g0982 34 747 Homeobox Transcription Factor Family AT1G05230 77.565 0.0 1152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bisa12g0982 START 1.3e-60 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g0982 12 15746886 15751326 Bisa02g3397 02 84780417 84786760 CCT
Bisa12g0982 12 15746886 15751326 Bisa12g0982 12 15746886 15751326 ECH